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The Transformer and its variants have been proven to be efficient sequence learners in many different domains. Despite their staggering success, a critical issue has been the enormous number of parameters that must be trained (ranging from…

Machine Learning · Computer Science 2021-10-28 Subhabrata Dutta , Tanya Gautam , Soumen Chakrabarti , Tanmoy Chakraborty

We study an ecology-inspired model for a population of bounded size, whose dynamics is governed by random birth, death, and immigration events. Stochastic fluctuations in the number of individuals give rise to a succession of alternating…

Populations and Evolution · Quantitative Biology 2026-05-27 Lucas M. Brugevin , Damián H. Zanette

We study a neural network model in which both neurons and synaptic interactions evolve in time simultaneously. The time evolution of synaptic interactions is described by a Langevin equation including a Hebbian learning term, and a bias…

Biological Physics · Physics 2009-03-12 T. Uezu , K. Abe , S. Miyoshi , M. Okada

Clonal interference, competition between multiple co-occurring beneficial mutations, has a major role in adaptation of asexual populations. We provide a simple individual based stochastic model of clonal interference taking into account a…

Probability · Mathematics 2015-05-19 Sylvain Billiard , Charline Smadi

We describe the time evolution of gene expression levels by using a time translational matrix to predict future expression levels of genes based on their expression levels at some initial time. We deduce the time translational matrix for…

Statistical Mechanics · Physics 2009-11-07 Neal S. Holter , Amos Maritan , Marek Cieplak , Nina V. Fedoroff , Jayanth R. Banavar

Tipping elements in the Earth System receive increased scientific attention over the recent years due to their nonlinear behavior and the risks of abrupt state changes. While being stable over a large range of parameters, a tipping element…

Physics and Society · Physics 2023-10-25 Jan Kohler , Nico Wunderling , Jonathan F. Donges , Jürgen Vollmer

We investigate the evolutionary dynamics of an age-structured population under weak frequency-dependent selection. It turns out that the weak selection is affected in a non-trivial way by the life-history trait. We can disentangle the…

Populations and Evolution · Quantitative Biology 2022-12-20 Sona John , Johannes Müller

Many biological systems regulate phenotypic heterogeneity as a fitness-maximising strategy in uncertain and dynamic environments. Analysis of such strategies is typically confined both to a discrete set of environmental conditions, and to a…

Populations and Evolution · Quantitative Biology 2025-07-02 Alexander P Browning , Sara Hamis

We present a stochastic, time-discrete boolean model which mimics the mesoscopic dynamics of the desorption reactions $A+A\to A+S$ and $A+A\to S+S$ in a 1D lattice. In the continuous-time limit, we derive a hierarchy of dynamical equations…

Statistical Mechanics · Physics 2009-11-07 E. Abad , P. Grosfils , G. Nicolis

The main topic of this thesis is the analysis of evolution equations reflecting issues in ecology and population dynamics. In mathematical modelling, the impact of environmental elements and the interaction between species is read into the…

Analysis of PDEs · Mathematics 2021-03-08 Elisa Affili

We consider a broad class of stochastic imitation dynamics over networks, encompassing several well known learning models such as the replicator dynamics. In the considered models, players have no global information about the game…

Systems and Control · Computer Science 2021-03-02 Lorenzo Zino , Giacomo Como , Fabio Fagnani

Evolutionary game dynamics is one of the most fruitful frameworks for studying evolution in different disciplines, from Biology to Economics. Within this context, the approach of choice for many researchers is the so-called replicator…

Populations and Evolution · Quantitative Biology 2009-11-14 Carlos P. Roca , José A. Cuesta , Angel Sánchez

Predators often consume multiple prey and by mutually subsidizing a shared predator, the prey may reciprocally harm each other. When predation levels are high, this apparent competition can culminate in a prey species being displaced.…

Populations and Evolution · Quantitative Biology 2019-02-12 Sebastian J. Schreiber , Swati Patel

We compare and contrast the long-time dynamical properties of two individual-based models of biological coevolution. Selection occurs via multispecies, stochastic population dynamics with reproduction probabilities that depend nonlinearly…

Populations and Evolution · Quantitative Biology 2011-11-10 Per Arne Rikvold

We employ Monte Carlo simulations to numerically study the temporal evolution and transient oscillations of the population densities, the associated frequency power spectra, and the spatial correlation functions in the (quasi-)steady state…

Populations and Evolution · Quantitative Biology 2015-03-18 Qian He , Mauro Mobilia , Uwe C. Tauber

We investigate the spatiotemporal dynamics of coupled circle map lattices, evolving under synchronous (parallel) updating on one hand and asynchronous (random) updating rules on the other. Synchronous evolution of extended spatiotemporal…

Chaotic Dynamics · Physics 2007-05-23 Neelima Gupte , T. M. Janaki , Sudeshna Sinha

What features characterise complex system dynamics? Power laws and scale invariance of fluctuations are often taken as the hallmarks of complexity, drawing on analogies with equilibrium critical phenomena[1-3]. Here we argue that slow,…

Statistical Mechanics · Physics 2007-05-23 Paul Anderson , Henrik Jeldtoft Jensen , L. P. Oliveira , Paolo Sibani

This paper considers the problem of learning, from samples, the dependency structure of a system of linear stochastic differential equations, when some of the variables are latent. In particular, we observe the time evolution of some…

Machine Learning · Computer Science 2012-05-02 Ali Jalali , Sujay Sanghavi

We consider a stochastic individual based model where each predator searches during a random time and then manipulates its prey or rests. The time distributions may be non-exponential. An age structure allows to describe these interactions…

Dynamical Systems · Mathematics 2021-03-31 Vincent Bansaye , Bertand Cloez

The growth of a population divided among spatial sites, with migration between the sites, is sometimes modelled by a product of random matrices, with each diagonal elements representing the growth rate in a given time period, and…

Populations and Evolution · Quantitative Biology 2015-05-04 David Steinsaltz , Shripad Tuljapurkar