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The dynamics of a single chain tethered to an interface and in contact with a cross-linked network is examined numerically. When the network is put in contact with the tethered chain, the chain moves with dynamics that are highly…

Condensed Matter · Physics 2008-02-03 J. M. Deutsch , Hyoungsoo Yoon

We use the recently introduced small-world networks (SWN) to model cross-linked polymers, as an extension of the linear Rouse-chain. We study the SWN-dynamics under the influence of external forces. Our focus is on the structurally and…

Statistical Mechanics · Physics 2009-10-31 S. Jespersen , I. M. Sokolov , A. Blumen

Deep convolutional networks have witnessed unprecedented success in various machine learning applications. Formal understanding on what makes these networks so successful is gradually unfolding, but for the most part there are still…

Machine Learning · Computer Science 2017-04-11 Yoav Levine , David Yakira , Nadav Cohen , Amnon Shashua

Using the theory of elasticity of polymer gels we show that large-scale cross-link density patterns written into the structure of the network in the melt state, can be revealed upon swelling by monitoring the monomer density patterns. We…

Soft Condensed Matter · Physics 2016-02-17 Sergey Panyukov , Yitzhak Rabin

The flow and deformation of macromolecules is ubiquitous in nature and industry, and an understanding of this phenomenon at both macroscopic and microscopic length scales is of fundamental and practical importance. Here we present the…

We propose a coarse-grained model for polymer chains and polymer networks based on the meso-scale dynamics. The model takes the internal degrees of freedom of the constituent polymer chains into account using memory functions and colored…

Soft Condensed Matter · Physics 2008-04-01 Takashi Shibata , Hidemitsu Furukawa , Toshihiro Kawakatsu

The role of porous structure and glass density in response to compressive deformation of amorphous materials is investigated via molecular dynamics simulations. The disordered, porous structures were prepared by quenching a high-temperature…

Soft Condensed Matter · Physics 2018-09-18 Nikolai V. Priezjev , Maxim A. Makeev

Biopolymer Networks play an important role in coordinating and regulating collective cellular dynamics via a number of signaling pathways. Here, we investigate the mechanical response of a model biopolymer network due to the active…

Soft Condensed Matter · Physics 2016-11-23 Long Liang , Christopher Jones , Bo Sun , Yang Jiao

Using a coarse-grained bead-spring model for semi-flexible macromolecules forming a polymer brush, structure and dynamics of the polymers is investigated, varying chain stiffness and grafting density. The anchoring condition for the grafted…

Soft Condensed Matter · Physics 2014-01-28 Andrey Milchev , Kurt Binder

Many research fields, reaching from social networks and epidemiology to biology and physics, have experienced great advance from recent developments in random graphs and network theory. In this paper we propose to view percolation on a…

Soft Condensed Matter · Physics 2019-08-21 Verena Schamboeck , Piet D. Iedema , Ivan Kryven

Current theories on the conformation and dynamics of unknotted and non-concatenated ring polymers in melt conditions describe each ring as a tree-like double-folded object. While evidence from simulations supports this picture on a single…

Soft Condensed Matter · Physics 2022-12-02 Mattia Alberto Ubertini , Jan Smrek , Angelo Rosa

The function of a real network depends not only on the reliability of its own components, but is affected also by the simultaneous operation of other real networks coupled with it. Robustness of systems composed of interdependent network…

Physics and Society · Physics 2015-07-10 Filippo Radicchi

We study the friction between a flat solid surface where polymer chains have been end-grafted and a cross-linked elastomer at low sliding velocity. The contribution of isolated grafted chains' penetration in the sliding elastomer has been…

Soft Condensed Matter · Physics 2015-06-24 Thomas Vilmin , Elie Raphael

We evaluate the van der Waals (vdW) interaction energy at zero temperature between two undoped strained graphene layers separated by a finite distance. We consider the following three models for the anisotropic case: (a) where one of the…

Materials Science · Physics 2014-06-25 Anand Sharma , Peter Harnish , Alexander Sylvester , Valeri N. Kotov , A. H. Castro Neto

Using molecular dynamics simulations, we investigate the aggregation behavior of neutral stiff (rod-like) and flexible polymer chains mediated by attractive crowders. Attractive crowders serve as bridging agents, inducing aggregation…

Soft Condensed Matter · Physics 2025-04-02 Hitesh Garg , Satyavani Vemparala

Recurrence networks are powerful tools used effectively in the nonlinear analysis of time series data. The analysis in this context is done mostly with unweighted and undirected complex networks constructed with specific criteria from the…

Chaotic Dynamics · Physics 2017-09-18 Rinku Jacob , K. P. Harikrishnan , R. Misra , G. Ambika

In some recent experiments on entangled polymers of stress growth in startup of fast shear flows an undershoot in the shear stress is observed following the overshoot, i.e., before approaching the steady state. Whereas tumbling of the…

Soft Condensed Matter · Physics 2023-07-20 Yuichi Masubuchi , Dimitris Vlassopoulos , Giovanni Ianniruberto , Giuseppe Marrucci

Networks (or graphs) are used to model the dyadic relations between entities in a complex system. In cases where there exists multiple relations between the entities, the complex system can be represented as a multilayer network, where the…

Social and Information Networks · Computer Science 2019-10-04 Abhishek Santra , Sanjukta Bhowmick , Sharma Chakravarthy

Accurate, yet computationally efficient energy functions are essential for state-of-the art molecular dynamics (MD) studies of condensed phase systems. Here, a generic workflow based on a combination of machine learning-based and empirical…

Chemical Physics · Physics 2025-07-01 Eric D. Boittier , Silvan Käser , Markus Meuwly

A novel field theoretical approach towards modelling dynamic networking in complex systems is presented. An equilibrium networking formalism which utilises Gaussian fields is adapted to model the dynamics of particles that can bind and…

Soft Condensed Matter · Physics 2025-05-27 Nadine du Toit , Kristian K. Müller-Nedebock