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Machine learning solutions are very popular in the field of chemoinformatics, where they have numerous applications, such as novel drug discovery or molecular property prediction. Molecular fingerprints are algorithms commonly used for…

Quantitative Methods · Quantitative Biology 2024-04-01 Michał Szafarczyk , Piotr Ludynia , Przemysław Kukla

Software vulnerabilities are a fundamental cause of cyber attacks. Effectively identifying these vulnerabilities is essential for robust cybersecurity, yet it remains a complex and challenging task. In this paper, we present SafePyScript, a…

Software Engineering · Computer Science 2024-11-04 Talaya Farasat , Atiqullah Ahmadzai , Aleena Elsa George , Sayed Alisina Qaderi , Dusan Dordevic , Joachim Posegga

We present PyThaiNLP, a free and open-source natural language processing (NLP) library for Thai language implemented in Python. It provides a wide range of software, models, and datasets for Thai language. We first provide a brief…

This paper describes HyperStream, a large-scale, flexible and robust software package, written in the Python language, for processing streaming data with workflow creation capabilities. HyperStream overcomes the limitations of other…

Machine Learning · Computer Science 2019-08-09 Tom Diethe , Meelis Kull , Niall Twomey , Kacper Sokol , Hao Song , Miquel Perello-Nieto , Emma Tonkin , Peter Flach

As data are generated more and more from multiple disparate sources, multiview data sets, where each sample has features in distinct views, have ballooned in recent years. However, no comprehensive package exists that enables…

OWLOOP is an Application Programming Interface (API) for using the Ontology Web Language (OWL) by the means of Object-Oriented Programming (OOP). It is common to design software architectures using the OOP paradigm for increasing their…

Artificial Intelligence · Computer Science 2022-01-03 Luca Buoncompagni , Syed Yusha Kareem , Fulvio Mastrogiovanni

Reliable numerical computations are central to scientific computing, but the floating-point arithmetic that enables large-scale models is error-prone. Numeric exceptions are a common occurrence and can propagate through code, leading to…

Programming Languages · Computer Science 2024-03-26 Taylor Allred , Xinyi Li , Ashton Wiersdorf , Ben Greenman , Ganesh Gopalakrishnan

In this paper, we introduce Pysimfrac, a open-source python library for generating 3-D synthetic fracture realizations, integrating with fluid simulators, and performing analysis. Pysimfrac allows the user to specify one of three fracture…

Geophysics · Physics 2023-09-26 Eric Guiltinan , Javier E. Santos , Prakash Purswani , Jeffrey D. Hyman

This paper introduces anomalib, a novel library for unsupervised anomaly detection and localization. With reproducibility and modularity in mind, this open-source library provides algorithms from the literature and a set of tools to design…

Computer Vision and Pattern Recognition · Computer Science 2022-02-18 Samet Akcay , Dick Ameln , Ashwin Vaidya , Barath Lakshmanan , Nilesh Ahuja , Utku Genc

Scientific workflow management systems offer features for composing complex computational pipelines from modular building blocks, for executing the resulting automated workflows, and for recording the provenance of data products resulting…

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello

The use of Python is noticeably growing among the scientific community, and Astronomy is not an exception. The power of Python consists of being an extremely versatile high-level language, easy to program that combines both traditional…

Instrumentation and Methods for Astrophysics · Physics 2018-07-16 Daniel M. Faes

DeeProb-kit is a unified library written in Python consisting of a collection of deep probabilistic models (DPMs) that are tractable and exact representations for the modelled probability distributions. The availability of a representative…

Machine Learning · Computer Science 2022-12-09 Lorenzo Loconte , Gennaro Gala

Application Programming Interfaces (APIs) are essential tools for social work researchers aiming to harness advanced technologies like Large Language Models (LLMs) and other AI services. This paper demystifies APIs and illustrates how they…

Software Engineering · Computer Science 2024-10-29 Brian E. Perron , Hui Luan , Zia Qi , Bryan G. Victor , Kavin Goyal

Radio astronomy observatories with high throughput back end instruments require real-time data processing. While computing hardware continues to advance rapidly, development of real-time processing pipelines remains difficult and…

With the ever-increasing volume of data, there is an urgent need to provide expressive and efficient tools to support Big Data analytics. The declarative logical language Datalog has proven very effective at expressing concisely graph,…

Databases · Computer Science 2022-09-07 Mingda Li , Jin Wang , Guorui Xiao , Youfu Li , Carlo Zaniolo

Since its inception in 2016, Federated Learning (FL) has been gaining tremendous popularity in the machine learning community. Several frameworks have been proposed to facilitate the development of FL algorithms, but researchers often…

Machine Learning · Computer Science 2024-12-23 Mirko Polato

Library migration is the process of replacing a library with a similar one in a software project. Manual library migration is time consuming and error prone, as it requires developers to understand the Application Programming Interfaces…

Software Engineering · Computer Science 2026-02-25 Mohayeminul Islam , Ajay Kumar Jha , May Mahmoud , Sarah Nadi

Large collections of time series data are commonly organized into structures with different levels of aggregation; examples include product and geographical groupings. It is often important to ensure that the forecasts are coherent so that…

1. Natural sounds have been recorded for millions of hours over the previous decades using passive acoustic monitoring. Improvements in deep learning models have vastly accelerated the analysis of large portions of this data. While new…

Machine Learning · Computer Science 2026-04-14 Vincent S. Kather , Sylvain Haupert , Burooj Ghani , Dan Stowell
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