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Intercellular signaling has an important role in organism development, but not all communication occurs using the same mechanism. Here, we analyze the energy efficiency of intercellular signaling by two canonical mechanisms: diffusion of…

Quantitative Methods · Quantitative Biology 2022-11-30 Hyunjoong Kim , Yoichiro Mori , Joshua B. Plotkin

This paper considers the impact of external noise sources, including interfering transmitters, on a diffusive molecular communication system, where the impact is measured as the number of noise molecules expected to be observed at a passive…

Information Theory · Computer Science 2015-11-20 Adam Noel , Karen C. Cheung , Robert Schober

Recent molecular communication (MC) research has integrated more detailed computational models to capture the dynamics of practical biophysical systems. This research focuses on developing realistic models for MC transceivers inspired by…

A molecular communication channel is determined by the received signal. Received signal models form the basis for studies focused on modulation, receiver design, capacity, and coding depend on the received signal models. Therefore, it is…

Emerging Technologies · Computer Science 2016-11-21 H. Birkan Yilmaz , Changmin Lee , Yae Jee Cho , Chan-Byoung Chae

To communicate at the nanoscale, researchers have proposed molecular communication as an energy-efficient solution. The drawback to this solution is that the histogram of the molecules' hitting times, which constitute the molecular signal…

Emerging Technologies · Computer Science 2018-08-21 Bayram Cevdet Akdeniz , Nafi Ahmet Turgut , H. Birkan Yilmaz , Chan-Byoung Chae , Tuna Tugcu , Ali Emre Pusane

This work builds on our earlier work on designing demodulators for diffusion-based molecular communications using a Markovian approach. The demodulation filters take the form of an ordinary differential equation (ODE) which computes the…

Information Theory · Computer Science 2020-07-13 Muhammad Usman Riaz , Hamdan Awan , Chun Tung Chou

Exact analytical channel models for molecular communication via diffusion (MCvD) systems involving multiple fully absorbing receivers (FARs) in a three-dimensional (3- D) medium are hard to obtain due to the mathematical intractability of…

Information Theory · Computer Science 2020-09-15 Nithin V. Sabu , Neeraj Varshney , Abhishek K. Gupta

Molecular signalling in living cells occurs at low copy numbers and is thereby inherently limited by the noise imposed by thermal diffusion. The precision at which biochemical receptors can count signalling molecules is intimately related…

Statistical Mechanics · Physics 2016-09-26 Aljaz Godec , Ralf Metzler

In a diffusion-based molecular communication system, molecules are employed to convey information. When propagation and reception processes are considered in a framework of first passage processes, we need to focus on absorbing receivers.…

Emerging Technologies · Computer Science 2016-09-05 H. Birkan Yilmaz , Gee-Yong Suk , Chan-Byoung Chae

An improved inference method for densely connected systems is presented. The approach is based on passing condensed messages between variables, representing macroscopic averages of microscopic messages. We extend previous work that showed…

Information Theory · Computer Science 2009-11-11 Juan P. Neirotti , David Saad

Diffusive molecular dynamics is a novel model for materials with atomistic resolution that can reach diffusive time scales. The main ideas of diffusive molecular dynamics are to first minimize an approximate variational Gaussian free energy…

Numerical Analysis · Mathematics 2015-06-09 Gideon Simpson , Mitchell Luskin , David J. Srolovitz

Diffusion-based molecular communication over nanonetworks is an emerging communication paradigm that enables nanomachines to communicate by using molecules as the information carrier. For such a communication paradigm, Concentration Shift…

Information Theory · Computer Science 2014-01-20 Subodh Pudasaini , Seokjoo Shin , Kyung Sup Kwak

In this paper, we investigate the achievable rate of a diffusive Molecular Communication (MC) channel with fully absorbing receiver, which counts particles absorbed along each symbol interval and resets the counter at every interval…

Information Theory · Computer Science 2023-06-08 Fardad Vakilipoor , Luca Barletta , Stefano Bregni , Maurizio Magarini

A diffusion molecular channel is a channel with memory, as molecules released into the medium hit the receptors after a random delay. Coding over the diffusion channel is performed by choosing the type, intensity, or the released time of…

In this paper, we propose novel modulation techniques using isomers as messenger molecules for nano communication via diffusion. To evaluate achievable rate performance, we compare the proposed techniques with concentration-based and…

Quantitative Methods · Quantitative Biology 2012-01-05 Na-Rae Kim , Chan-Byoung Chae

In this paper, we consider target detection in suspicious tissue via diffusive molecular communications (MCs). If a target is present, it continuously and with a constant rate secretes molecules of a specific type, so-called biomarkers,…

Emerging Technologies · Computer Science 2018-05-07 Reza Mosayebi , Wayan Wicke , Vahid Jamali , Arman Ahmadzadeh , Robert Schober , Masoumeh Nasiri-Kenari

In this work, receiver diversity in advection-dominated diffusion-advection channels is investigated. Strong directed flow fundamentally alters the communication-theoretic properties of molecular communication systems (MC). Specifically,…

Signal Processing · Electrical Eng. & Systems 2026-02-02 Fatih Merdan , Ozgur B. Akan

To achieve continuous massive data transmission with significantly reduced data payload, the users can adopt semantic communication techniques to compress the redundant information by transmitting semantic features instead. However, current…

Signal Processing · Electrical Eng. & Systems 2024-01-30 Youcheng Zeng , Xinxin He , Xu Chen , Haonan Tong , Zhaohui Yang , Yijun Guo , Jianjun Hao

In this paper, we propose a symbol interval optimization algorithm in molecular communication with drift. Proper symbol intervals are important in practical communication systems since information needs to be sent as fast as possible with…

Information Theory · Computer Science 2014-07-23 Na-Rae Kim , Andrew W. Eckford , Chan-Byoung Chae

Molecular communication is an emerging paradigm for systems that rely on the release of molecules as information carriers. Communication via molecular diffusion is a popular strategy that is ubiquitous in nature and very fast over distances…

Emerging Technologies · Computer Science 2016-09-13 Adam Noel , Dimitrios Makrakis , Abdelhakim Hafid
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