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Modern biological studies often involve testing many hypotheses organized in a group or a hierarchical structure, such as a directed acyclic graph (DAG). In these studies, researchers often wish to control the false discovery rate (FDR)…

Methodology · Statistics 2025-09-22 Marina Bogomolov , Shinjini Nandi

Directed acyclic graph (DAG) learning is a central task in structure discovery and causal inference. Although the field has witnessed remarkable advances over the past few years, it remains statistically and computationally challenging to…

Machine Learning · Statistics 2026-02-09 Ryan Thompson , Edwin V. Bonilla , Robert Kohn

Direct Acyclic Graph (DAG)-based ledger and the corresponding consensus algorithm has been identified as a promising technology for Internet of Things (IoT). Compared with Proof-of-Work (PoW) and Proof-of-Stake (PoS) that have been widely…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-19 Yixin Li , Bin Cao , Mugen Peng , Long Zhang , Lei Zhang , Daquan Feng , Jihong Yu

Assuming a directed acyclic graph (DAG) that represents prior knowledge of causal relationships between variables is a common starting point for cause-effect estimation. Existing literature typically invokes hypothetical domain expert…

Machine Learning · Statistics 2025-03-11 Kirtan Padh , Zhufeng Li , Cecilia Casolo , Niki Kilbertus

We propose a new differentiable probabilistic model over DAGs (DP-DAG). DP-DAG allows fast and differentiable DAG sampling suited to continuous optimization. To this end, DP-DAG samples a DAG by successively (1) sampling a linear ordering…

Machine Learning · Computer Science 2022-03-17 Bertrand Charpentier , Simon Kibler , Stephan Günnemann

We consider the problem of learning the underlying causal structure among a set of variables, which are assumed to follow a Bayesian network or, more specifically, a linear recursive structural equation model (SEM) with the associated…

Statistics Theory · Mathematics 2025-08-05 Anamitra Chaudhuri , Anirban Bhattacharya , Yang Ni

We study monotonicity testing of real-valued functions on directed acyclic graphs (DAGs) with $n$ vertices. For every constant $\delta>0$, we prove a $\Omega(n^{1/2-\delta}/\sqrt{\varepsilon})$ lower bound against non-adaptive two-sided…

Data Structures and Algorithms · Computer Science 2026-03-24 Yuichi Yoshida

Inferring the structure of directed acyclic graphs (DAGs) from data is a central challenge in causal discovery, particularly in modern high-dimensional settings where large-scale interventional data are increasingly available. While…

We study the problem of actively learning a non-parametric choice model based on consumers' decisions. We present a negative result showing that such choice models may not be identifiable. To overcome the identifiability problem, we…

Machine Learning · Computer Science 2024-04-26 Fransisca Susan , Negin Golrezaei , Ehsan Emamjomeh-Zadeh , David Kempe

Controlling the false discovery rate (FDR) is a powerful approach to multiple testing. In many applications, the tested hypotheses have an inherent hierarchical structure. In this paper, we focus on the fixed sequence structure where the…

Methodology · Statistics 2016-11-11 Gavin Lynch , Wenge Guo , Sanat K. Sarkar , Helmut Finner

Probabilistic graphical models are graphical representations of probability distributions. Graphical models have applications in many fields including biology, social sciences, linguistic, neuroscience. In this paper, we propose directed…

Machine Learning · Statistics 2014-06-10 Ru Wang , Jie Peng

Most link prediction methods return estimates of the connection probability of missing edges in a graph. Such output can be used to rank the missing edges from most to least likely to be a true edge, but does not directly provide a…

Methodology · Statistics 2024-03-26 Ariane Marandon

Acyclic model, often depicted as a directed acyclic graph (DAG), has been widely employed to represent directional causal relations among collected nodes. In this article, we propose an efficient method to learn linear non-Gaussian DAG in…

Machine Learning · Statistics 2021-11-02 Ruixuan Zhao , Xin He , Junhui Wang

Greedy algorithms have long been a workhorse for learning graphical models, and more broadly for learning statistical models with sparse structure. In the context of learning directed acyclic graphs, greedy algorithms are popular despite…

Machine Learning · Computer Science 2021-11-01 Goutham Rajendran , Bohdan Kivva , Ming Gao , Bryon Aragam

Directed Acyclic Graphical (DAG) models efficiently formulate causal relationships in complex systems. Traditional DAGs assume nodes to be scalar variables, characterizing complex systems under a facile and oversimplified form. This paper…

Methodology · Statistics 2024-04-23 Tian Lan , Ziyue Li , Junpeng Lin , Zhishuai Li , Lei Bai , Man Li , Fugee Tsung , Rui Zhao , Chen Zhang

We introduce a new class of identifiable DAG models where the conditional distribution of each node given its parents belongs to a family of generalized hypergeometric distributions (GHD). A family of generalized hypergeometric…

Machine Learning · Statistics 2019-10-17 Gunwoong Park , Hyewon Park

We consider the problem of jointly estimating multiple related directed acyclic graph (DAG) models based on high-dimensional data from each graph. This problem is motivated by the task of learning gene regulatory networks based on gene…

Statistics Theory · Mathematics 2020-06-30 Yuhao Wang , Santiago Segarra , Caroline Uhler

Bayesian networks, with structure given by a directed acyclic graph (DAG), are a popular class of graphical models. However, learning Bayesian networks from discrete or categorical data is particularly challenging, due to the large…

Methodology · Statistics 2018-02-06 Jiaying Gu , Fei Fu , Qing Zhou

Recovering underlying Directed Acyclic Graph (DAG) structures from observational data is highly challenging due to the combinatorial nature of the DAG-constrained optimization problem. Recently, DAG learning has been cast as a continuous…

Machine Learning · Computer Science 2022-12-23 Zhen Zhang , Ignavier Ng , Dong Gong , Yuhang Liu , Ehsan M Abbasnejad , Mingming Gong , Kun Zhang , Javen Qinfeng Shi

Bayesian causal discovery offers the power to quantify epistemic uncertainties among a broad range of structurally diverse causal theories potentially explaining the data, represented in forms of directed acyclic graphs (DAGs). However,…

Machine Learning · Computer Science 2024-08-30 Nu Hoang , Bao Duong , Thin Nguyen