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Reconstruction of neuroanatomy is a fundamental problem in neuroscience. Stochastic expression of colors in individual cells is a promising tool, although its use in the nervous system has been limited due to various sources of variability…

Neurons and Cognition · Quantitative Biology 2017-01-24 Uygar Sümbül , Douglas Roussien , Fei Chen , Nicholas Barry , Edward S. Boyden , Dawen Cai , John P. Cunningham , Liam Paninski

Estimating precise metric depth and scene reconstruction from monocular endoscopy is a fundamental task for surgical navigation in robotic surgery. However, traditional stereo matching adopts binocular images to perceive the depth…

Robotics · Computer Science 2022-11-29 Ruofeng Wei , Bin Li , Hangjie Mo , Fangxun Zhong , Yonghao Long , Qi Dou , Yun-Hui Liu , Dong Sun

A general concept of 3D volumetric visualization systems is described based on 3D discrete voxel scenes (worlds) representation. Definitions of 3D discrete voxel scene (world) basic elements and main steps of the image synthesis algorithm…

Graphics · Computer Science 2017-02-07 Anas M. Al-Oraiqat , E. A. Bashkov , S. A. Zori , Aladdein M. Amro

In this paper, a hierarchical image matting model is proposed to extract blood vessels from fundus images. More specifically, a hierarchical strategy utilizing the continuity and extendibility of retinal blood vessels is integrated into the…

Computer Vision and Pattern Recognition · Computer Science 2017-10-10 Zhun Fan , Jiewei Lu , Wenji Li , Caimin Wei , Han Huang , Xinye Cai , Xinjian Chen

This paper presents a novel framework for processing volumetric medical information using Visual Transformers (ViTs). First, We extend the state-of-the-art Swin Transformer model to the 3D medical domain. Second, we propose a new approach…

Image and Video Processing · Electrical Eng. & Systems 2024-06-06 Cristhian Forigua , Maria Escobar , Pablo Arbelaez

Three-dimensional (3D) and dynamic 3D+time (4D) reconstruction of coronary arteries from X-ray coronary angiography (CA) has the potential to improve clinical procedures. However, there are multiple challenges to be addressed, most notably,…

Image and Video Processing · Electrical Eng. & Systems 2025-07-28 Kirsten W. H. Maas , Danny Ruijters , Nicola Pezzotti , Anna Vilanova

Billions of vascular access procedures are performed annually worldwide, serving as a crucial first step in various clinical diagnostic and therapeutic procedures. For pediatric or elderly individuals, whose vessels are small in size…

Robotics · Computer Science 2025-04-09 Shuaiqi Jing , Tianliang Yao , Ke Zhang , Di Wu , Qiulin Wang , Zixi Chen , Ke Chen , Peng Qi

The renal vasculature, acting as a resource distribution network, plays an important role in both the physiology and pathophysiology of the kidney. However, no imaging techniques allow an assessment of the structure and function of the…

Computational Engineering, Finance, and Science · Computer Science 2023-05-11 Peidi Xu , Niels-Henrik Holstein-Rathlou , Stinne Byrholdt Søgaard , Carsten Gundlach , Charlotte Mehlin Sørensen , Kenny Erleben , Olga Sosnovtseva , Sune Darkner

Computed tomography has propelled scientific advances in fields from biology to materials science. This technology allows for the elucidation of 3-dimensional internal structure by the attenuation of x-rays through an object at different…

Computer Vision and Pattern Recognition · Computer Science 2022-11-02 Rey Mendoza , Minh Nguyen , Judith Weng Zhu , Vincent Dumont , Talita Perciano , Juliane Mueller , Vidya Ganapati

A cost-effective augmented reality (AR) system is presented for visualising three-dimensional magnetic field structures and charged-particle trajectories in magnetically confined fusion plasmas. The system presented in this study integrates…

Plasma Physics · Physics 2026-04-29 Akinobu Matsuyama

We present a self-supervised learning-based pipeline for dense 3D reconstruction from full-length monocular endoscopic videos without a priori modeling of anatomy or shading. Our method only relies on unlabeled monocular endoscopic videos…

Computer Vision and Pattern Recognition · Computer Science 2019-09-10 Xingtong Liu , Ayushi Sinha , Masaru Ishii , Gregory D. Hager , Russell H. Taylor , Mathias Unberath

Recently, machine learning has been successfully applied to model-based left ventricle (LV) segmentation. The general framework involves two stages, which starts with LV localization and is followed by boundary delineation. Both are driven…

Computer Vision and Pattern Recognition · Computer Science 2015-07-29 Peng Sun , Haoyin Zhou , Devon Lundine , James K. Min , Guanglei Xiong

3D reconstruction of biological tissues from a collection of endoscopic images is a key to unlock various important downstream surgical applications with 3D capabilities. Existing methods employ various advanced neural rendering techniques…

Computer Vision and Pattern Recognition · Computer Science 2024-07-02 Chenxin Li , Brandon Y. Feng , Yifan Liu , Hengyu Liu , Cheng Wang , Weihao Yu , Yixuan Yuan

In medical image visualization, path tracing of volumetric medical data like CT scans produces lifelike three-dimensional visualizations. Immersive VR displays can further enhance the understanding of complex anatomies. Going beyond the…

Graphics · Computer Science 2026-01-30 Constantin Kleinbeck , Hannah Schieber , Klaus Engel , Ralf Gutjahr , Daniel Roth

This paper proposes a new method for simultaneous 3D reconstruction and semantic segmentation of indoor scenes. Unlike existing methods that require recording a video using a color camera and/or a depth camera, our method only needs a small…

Computer Vision and Pattern Recognition · Computer Science 2019-06-20 Jingyu Yang , Ji Xu , Kun Li , Yu-Kun Lai , Huanjing Yue , Jianzhi Lu , Hao Wu , Yebin Liu

Indirect image registration is a promising technique to improve image reconstruction quality by providing a shape prior for the reconstruction task. In this paper, we propose a novel hybrid method that seeks to reconstruct high quality…

Image and Video Processing · Electrical Eng. & Systems 2019-12-18 Jiulong Liu , Angelica I. Aviles-Rivero , Hui Ji , Carola-Bibiane Schönlieb

The detection of vascular structures from noisy images is a fundamental process for extracting meaningful information in many applications. Most well-known vascular enhancing techniques often rely on Hessian-based filters. This paper…

Computer Vision and Pattern Recognition · Computer Science 2019-02-05 Haifa F. Alhasson , Shuaa S. Alharbi , Boguslaw Obara

3D reconstruction of medical images is a key technology in medical image analysis and clinical diagnosis, providing structural visualization support for disease assessment and surgical planning. Traditional methods are computationally…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Bin Liu , Wenyan Tian , Huangxin Fu , Zizheng Li , Zhifen He , Bo Li

We present a method for automated segmentation of the vasculature in retinal images. The method produces segmentations by classifying each image pixel as vessel or non-vessel, based on the pixel's feature vector. Feature vectors are…

Computer Vision and Pattern Recognition · Computer Science 2007-05-23 João V. B. Soares , Jorge J. G. Leandro , Roberto M. Cesar , Herbert F. Jelinek , Michael J. Cree

Robotic surgery has become a powerful tool for performing minimally invasive procedures, providing advantages in dexterity, precision, and 3D vision, over traditional surgery. One popular robotic system is the da Vinci surgical platform,…

Computer Vision and Pattern Recognition · Computer Science 2017-05-24 Menglong Ye , Edward Johns , Ankur Handa , Lin Zhang , Philip Pratt , Guang-Zhong Yang