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Identifying a coupled dynamical system out of many plausible candidates, each of which could serve as the underlying generator of some observed measurements, is a profoundly ill posed problem that commonly arises when modelling real world…

Neurons and Cognition · Quantitative Biology 2019-09-17 Amirhossein Jafarian , Peter Zeidman , Vladimir Litvak , Karl Friston

Mutual Information (MI) and Conditional Mutual Information (CMI) are multi-purpose tools from information theory that are able to naturally measure the statistical dependencies between random variables, thus they are usually of central…

Machine Learning · Computer Science 2022-11-22 Bao Duong , Thin Nguyen

Anatomic connections between brain areas affect information flow between neuronal circuits and the synchronization of neuronal activity. However, such structural connectivity does not coincide with effective connectivity, related to the…

Neurons and Cognition · Quantitative Biology 2015-06-03 Demian Battaglia , Annette Witt , Fred Wolf , Theo Geisel

Understanding the causal interactions in some brain tasks, such as face processing, remains a challenging and ambiguous process for researchers. In this study, we address this issue by employing a novel causal discovery method -Directed…

Neurons and Cognition · Quantitative Biology 2025-06-02 Ali Bavafa , Gholam-Ali Hossein-Zadeh

Medical Visual Question Answering (MedVQA) aims to generate clinically reliable answers conditioned on complex medical images and questions. However, existing methods often overfit to superficial cross-modal correlations, neglecting the…

Computer Vision and Pattern Recognition · Computer Science 2026-04-23 Zibo Xu , Qiang Li , Ke Lu , Jin Wang , Weizhi Nie , Yuting Su

Dynamic functional connectivity (DFC) analysis involves measuring correlated neural activity over time across multiple brain regions. Significant regional correlations among neural signals, such as those obtained from resting-state…

In contemporary scientific research, understanding the distinction between correlation and causation is crucial. While correlation is a widely used analytical standard, it does not inherently imply causation. This paper addresses the…

Machine Learning · Computer Science 2023-12-27 Cao Zhihao , Qu Hongchun

Motivation: Algorithms that discover variables which are causally related to a target may inform the design of experiments. With observational gene expression data, many methods discover causal variables by measuring each variable's degree…

Quantitative Methods · Quantitative Biology 2014-07-30 Eric V. Strobl , Shyam Visweswaran

Interpreting EEG signals linked to spoken language presents a complex challenge, given the data's intricate temporal and spatial attributes, as well as the various noise factors. Denoising diffusion probabilistic models (DDPMs), which have…

Computation and Language · Computer Science 2023-11-15 Soowon Kim , Seo-Hyun Lee , Young-Eun Lee , Ji-Won Lee , Ji-Ha Park , Seong-Whan Lee

Causal representation learning seeks to uncover causal relationships among high-level latent variables from low-level, entangled, and noisy observations. Existing approaches often either rely on deep neural networks, which lack…

Methodology · Statistics 2026-03-27 Wenjin Zhang , Yixin Wang , Yuqi Gu

Differential Case Marking (DCM) refers to the phenomenon where grammatical case marking is applied selectively based on semantic, pragmatic, or other factors. The emergence of DCM has been studied in artificial language learning experiments…

Computation and Language · Computer Science 2025-02-07 Yuchen Lian , Arianna Bisazza , Tessa Verhoef

Precision medicine involves answering counterfactual questions such as "Would this patient respond better to treatment A or treatment B?" These types of questions are causal in nature and require the tools of causal inference to be…

Computer Vision and Pattern Recognition · Computer Science 2021-07-15 Jacob C. Reinhold , Aaron Carass , Jerry L. Prince

Directed information (DI) is an information measure that attempts to capture directionality in the flow of information from one random process to another. It is closely related to other causal influence measures, such as transfer entropy,…

Information Theory · Computer Science 2026-02-11 Dor Tsur , Oron Sabag , Navin Kashyap , Haim Permuter , Gerhard Kramer

Criticality can be exactly demonstrated in certain models of brain activity, yet it remains challenging to identify in empirical data. We trained a fully connected deep neural network to learn the phases of an excitable model unfolding on…

Neurons and Cognition · Quantitative Biology 2022-06-13 Hernan Bocaccio , Enzo Tagliazucchi

In this paper, we deal with the problem of inferring causal directions when the data is on discrete domain. By considering the distribution of the cause $P(X)$ and the conditional distribution mapping cause to effect $P(Y|X)$ as independent…

Machine Learning · Statistics 2018-08-08 Furui Liu , Laiwan Chan

Inferring the causal direction and causal effect between two discrete random variables X and Y from a finite sample is often a crucial problem and a challenging task. However, if we have access to observational and interventional data, it…

Machine Learning · Statistics 2020-10-16 Peter Gmeiner

The dynamics of simple two-alternative forced-choice (2AFC) decisions are well-modeled by a class of random walk models (e.g. Laming, 1968; Ratcliff, 1978; Usher & McClelland, 2001; Bogacz et al., 2006). However, in real-life, even simple…

Neurons and Cognition · Quantitative Biology 2026-03-31 Michael Shvartsman , Vaibhav Srivastava , Narayanan Sundaram , Jonathan D. Cohen

The neural mechanism of memory has a very close relation with the problem of representation in artificial intelligence. In this paper a computational model was proposed to simulate the network of neurons in brain and how they process…

Neurons and Cognition · Quantitative Biology 2020-12-02 Hui Wei

This paper explores the intersection of Discrete Choice Modeling (DCM) and machine learning, focusing on the integration of image data into DCM's utility functions and its impact on model interpretability. We investigate the consequences of…

Computer Vision and Pattern Recognition · Computer Science 2023-12-25 Brian Sifringer , Alexandre Alahi

Dynamical behaviors of complex interacting systems, including brain activities, financial price movements, and physical collective phenomena, are associated with underlying interactions between the system's components. The issue of…

Machine Learning · Computer Science 2025-12-03 Shuhan Zheng , Ziqiang Li , Kantaro Fujiwara , Gouhei Tanaka