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Phototaxis is an important reaction to light displayed by a wide range of motile microorganisms. Flagellated eukaryotic microalgae in particular, like the model organism Chlamydomonas reinhardtii, steer either towards or away from light by…

Cell Behavior · Quantitative Biology 2016-11-28 Jorge Arrieta , Ana Barreira , Maurizio Chioccioli , Marco Polin , Idan Tuval

The formation of polarized signaling domains on cell membranes is a fundamental example of biological pattern formation. While such patterns resemble structures from equilibrium phase separation, they are intrinsically non-equilibrium,…

Biological Physics · Physics 2025-12-10 Damiano Andreghetti , Alfredo Braunstein , Luca Dall'Asta , Andrea Gamba

Floquet driven systems represent an extremely interesting arena to study out-of-equilibrium phenomena. For instance, they provide realizations of discrete time crystals, where the discrete time translation symmetry of the periodic…

Quantum Physics · Physics 2022-04-25 J. R. M. de Nova , F. Sols

Tracking experiments in dense biological tissues reveal a diversity of sources f or local energy injection at the cell scale. The effect of cell motility has been largely studied, but much less is known abo ut the effect of the observed…

Soft Condensed Matter · Physics 2017-11-29 Elsen Tjhung , Ludovic Berthier

Curvature fundamentally alters the collective properties of soft, active, and biological materials. Here we study motility-induced phase separation (MIPS), a canonical non-equilibrium transition, and demonstrate that even weak and slowly…

Soft Condensed Matter · Physics 2026-03-17 Toler H. Webb , Helen S. Ansell , Daniel M. Sussman

This study integrates pedestrian flow characteristics to formulate a mesoscopic cellular automata model tailored for simulating evacuations in large-scale scenarios. Departing from the conventional planar grid cell division, the model…

Physics and Society · Physics 2023-11-20 Wei Lv , Jinghui Wang , Zhiming Fang , Dun Mao

The phase structure of self-avoiding polymerized membranes is studied by extensive Hybrid Monte Carlo simulations. Several folding transitions from the flat to a collapsed state are found. Using a suitable order parameter and finite size…

Condensed Matter · Physics 2009-10-28 Christian Münkel , Dieter W. Heermann

Biological tissues transform between solid-like and liquid-like states in many fundamental physiological events. Recent experimental observations further suggest that in two-dimensional epithelial tissues these solid-liquid transformations…

Soft Condensed Matter · Physics 2024-05-06 Yiwen Tang , Siyuan Chen , Mark J. Bowick , Dapeng Bi

A lattice-gas cellular automaton (LGCA) model is used to simulate rippling and aggregation in myxobacteria. An efficient way of representing cells of different cell size, shape and orientation is presented that may be easily extended to…

Quantitative Methods · Quantitative Biology 2009-11-10 Mark S. Alber , Yi Jiang , Maria A. Kiskowski

Collectives of actively-moving particles can spontaneously separate into dilute and dense phases -- a fascinating phenomenon known as motility-induced phase separation (MIPS). MIPS is well-studied for randomly-moving particles with no…

Biological Physics · Physics 2023-01-31 Hongbo Zhao , Andrej Košmrlj , Sujit S. Datta

Cells have the ability to detect electric fields and respond to them with directed migratory movement. Investigations identified genes and proteins that play important roles in defining the migration efficiency. Nevertheless, the sensing…

Cell Behavior · Quantitative Biology 2020-10-01 Isabella Guido , Douglas Diehl , Nora Aleida Olszok , Eberhard Bodenschatz

Microorganismal motility is often characterised by complex responses to environmental physico-chemical stimuli. Although the biological basis of these responses is often not well understood, their exploitation already promises novel avenues…

Biological Physics · Physics 2019-11-26 Jorge Arrieta , Marco Polin , Ramón Saleta-Piersanti , Idan Tuval

Many critical biological processes, like wound healing, require confluent cell monolayers/bulk tissues to transition from a jammed solid-like to a fluid-like state. Although numerical studies anticipate changes in the cell shape alone can…

Soft Condensed Matter · Physics 2024-01-25 Pragya Arora , Souvik Sadhukhan , Saroj Kumar Nandi , Dapeng Bi , A K Sood , Rajesh Ganapathy

Macroscopic changes of group behavior of eusocial insects are studied from the viewpoint of non-equilibrium phase transitions. Recent combined study of experiments and mathematical modeling by the group led by the third author suggests that…

Statistical Mechanics · Physics 2025-02-14 Saori Morimoto , Makoto Katori , Hiraku Nishimori

Phase separation in a low-density gas-like phase and a high-density liquid-like one is a common trait of biological and synthetic self-propelling particles' systems. The competition between motility and stochastic forces is assumed to fix…

Soft Condensed Matter · Physics 2020-04-15 Pin Nie , Joyjit Chattoraj , Antonio Piscitelli , Patrick Doyle , Ran Ni , Massimo Pica Ciamarra

The critical properties of a cellular automaton model describing the spreading of infection of the Herpes Simplex Virus in corneal tissue are investigated through the dynamic Monte Carlo method. The model takes into account different cell…

Biological Physics · Physics 2007-05-23 Claudia Pio Ferreira , Jose Fernando Fontanari , Rita M. Zorzenon dos Santos

Experiments show that the movement of eukaryotic cells is regulated by a process of phase separation of two competing enzymes on the cell membrane, that effectively amplifies shallow external gradients of chemical attractant. Notably, the…

Statistical Mechanics · Physics 2008-12-19 Teresa Ferraro , Antonio de Candia , Andrea Gamba , Antonio Coniglio

We study many-body phase transitions in a one-dimensional ferromagnetic transversed field Ising model with an imaginary field and show that the system exhibits three phase transitions: one second-order phase transition and two…

Strongly Correlated Electrons · Physics 2024-08-12 Chao-Ze Lu , Xiaolong Deng , Su-Peng Kou , Gaoyong Sun

Autologous chemotaxis is the process in which cells secrete and detect molecules to determine the direction of fluid flow. Experiments and theory suggest that autologous chemotaxis fails at high cell densities because molecules from other…

Biological Physics · Physics 2023-05-08 Louis González , Andrew Mugler

We use a computational phase-field model together with analytical analysis to study how inter-cellular active forces can mediate individual cell morphology and collective motion in a confluent cell monolayer. Contractile inter-cellular…

Soft Condensed Matter · Physics 2021-11-30 Guanming Zhang , Julia M. Yeomans