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The protein folding problem must ultimately be solved on all length scales from the atomic up through a hierarchy of complicated structures. By analyzing the stability of the folding process using physics and mathematics, this paper shows…

Biological Physics · Physics 2015-05-28 Walter Simmons , Joel L. Weiner

The transmission of forces through a disordered granular system is studied by means of a geometrical-topological approach that reduces the granular packing into a set of layers. This layered structure constitutes the skeleton through which…

Soft Condensed Matter · Physics 2009-11-07 Tomaso Aste , Tiziana Di Matteo , Enrico Galleani d'Agliano

We report simulations of a two-dimensional, dense, bidisperse system of inelastic hard disks falling down a vertical tube under the influence of gravity. We examine the approach to jamming as the average flow of particles down the tube is…

Soft Condensed Matter · Physics 2009-11-13 Shubha Tewari , Bidita Tithi , Allison Ferguson , Bulbul Chakraborty

We use Brownian dynamics simulations and advanced topological profiling methods to characterize the out-of-equilibrium evolution of self-entanglement in linear polymers confined into nano-channels and under periodic compression. We…

Soft Condensed Matter · Physics 2020-06-22 Davide Michieletto , Enzo Orlandini , Matthew S Turner , Cristian Micheletti

Stress transmission inside three dimensional granular packings is investigated using computer simulations. Localized force perturbation techniques are implemented for frictionless and frictional shallow, ordered, granular arrays confined by…

Soft Condensed Matter · Physics 2015-05-30 Abdullah Cakir , Leonardo E. Silbert

The behaviour of a viscous drop squeezed between two horizontal planes is treated by both theory and experiment. When the squeezing force F is constant and surface tension is neglected, the theory predicts ultimate growth of the radius a~…

Fluid Dynamics · Physics 2021-03-29 Keith Moffatt , Howard Guest , Herbert Huppert

We investigate the Green function of two-dimensional dense random packings of grains in order to discriminate between the different theories of stress transmission in granular materials. Our computer simulations allow for a detailed…

Soft Condensed Matter · Physics 2009-11-11 N. Gland , P. Wang , Hernan A. Makse

The gravitational evolution of the genus and other statistics of isodensity contours of the density field is derived analytically in a weakly nonlinear regime using second-order perturbation theory. The effect of final smoothing in…

Astrophysics · Physics 2016-08-30 Takahiko Matsubara

Granular materials densify under repeated mechanical perturbations, a nonequilibrium dynamics that underlies many natural and industrial processes. Because granular relaxation is governed by frictional contacts and energy dissipation, this…

Soft Condensed Matter · Physics 2025-10-20 Ye Yuan , Walter Kob , Hajime Tanaka

Granular matter takes many paths to pack. Gentle compression, compaction or repetitive tapping can happen in natural and industrial processes. The path influences the packing microstructure, and thus macroscale properties, particularly for…

Soft Condensed Matter · Physics 2023-10-26 A. P. Santos , Ishan Srivastava , Leonardo E. Silbert , Jeremy B. Lechman , Gary S. Grest

A granular assembly composed of a collection of identical grains may pack under different microscopic configurations with microscopic features that are sensitive to the preparation history. A given configuration may also change in response…

Soft Condensed Matter · Physics 2009-11-10 A. P. F. Atman , P. Brunet , J. Geng , G. Reydellet , G. Combe , P. Claudin , R. P. Behringer , E. Clément

We experimentally measure a three-dimensional (3D) granular system's reversibility under cyclic compression. We image the grains using a refractive-index-matched fluid, then analyze the images using the artificial intelligence of…

Soft Condensed Matter · Physics 2022-08-04 Zackery A. Benson , Anton Peshkov , Nicole Yunger Halpern , Derek C. Richardson , Wolfgang Losert

We propose a theory which describes the density relaxation of loosely packed, cohesionless granular material under mechanical tapping. Using the compactivity concept we develope a formalism of statistical mechanics which allows us to…

Disordered Systems and Neural Networks · Physics 2009-10-30 S. F. Edwards , D. V. Grinev

Understanding how stick-slip dynamics manifests in diverse physical conditions is a crucial topic in tribology. Although it has been extensively studied in simple frictional configurations, the characterization of stick-slip behavior in…

Soft Condensed Matter · Physics 2026-02-17 A. Plati , F. Restagno , C. Poulard

Because the constant extension ensemble of single chain molecule is not always equivalent with constant force ensemble, a model of double-stranded conformations, as in RNA molecules and $\beta$-sheets in proteins, with fixed extension…

Soft Condensed Matter · Physics 2007-05-23 Fei Liu , Luru Dai , Tao Xu , Zhong-can Ou-Yang

The electrical resistance decay of a metallic granular packing has been measured as a function of time. This measurement gives information about the size of the conducting cluster formed by the well connected grains. Several regimes have…

Materials Science · Physics 2009-11-10 S. Dorbolo , M. Ausloos , N. Vandewalle , M. Houssa

We suggest a theoretical description of the force-induced translocation dynamics of a polymer chain through a nanopore. Our consideration is based on the tensile (Pincus) blob picture of a pulled chain and the notion of propagating front of…

Soft Condensed Matter · Physics 2012-04-17 J. L. A. Dubbeldam , V. G. Rostiashvili , A. Milchev , T. A. Vilgis

The measurement of force distributions in sandpiles provides a useful way to test concepts and models of the way forces propagate within noncohesive granular materials. Recent theory by Bouchaud et al. implies that the internal structure of…

Soft Condensed Matter · Physics 2007-05-23 Junfei Geng , Emily Longhi , R. P. Behringer , D. W. Howell

We develop the theory of the coupling between in-plane order and out-of-plane geometry in twisted, two-dimensionally ordered filament bundles based on the non-linear continuum elasticity theory of columnar materials. We show that twisted…

Soft Condensed Matter · Physics 2015-06-03 Gregory M. Grason

Stress paths in granular matter often suffer sudden large-scale rearrangements when the system is slightly perturbed, i.e. granular systems are unstable. We show in this paper that the observed instability is due to the minimally rigid, or…

Soft Condensed Matter · Physics 2007-05-23 Cristian F. Moukarzel