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Chemical reactions inside cells are generally considered to happen within fixed-size compartments. Needless to say, cells and their compartments are highly dynamic. Thus, such stringent assumptions may not reflect biochemical reality, and…

Quantitative Methods · Quantitative Biology 2016-02-17 Atiyo Ghosh , Tatiana T. Marquez-Lago

We consider second-order PDE problems set in unbounded domains and discretized by Lagrange finite elements on a finite mesh, thus introducing an artificial boundary in the discretization. Specifically, we consider the reaction diffusion…

Numerical Analysis · Mathematics 2025-03-31 T. Chaumont-Frelet

This paper investigates a reaction-advection-diffusion system modeling interspecific competition between two species over bounded domains. The kinetic terms are assumed to satisfy the Beddington-DeAngelis functional responses. We consider…

Analysis of PDEs · Mathematics 2016-03-29 Ling Jin , Qi Wang , Zengyan Zhang

We study the backstepping stabilization of higher order linear and nonlinear Schr\"odinger equations on a finite interval, where the boundary feedback acts from the left Dirichlet boundary condition. The plant is stabilized with a…

Optimization and Control · Mathematics 2020-09-15 Ahmet Batal , Türker Özsarı , Kemal Cem Yılmaz

Deriving evolution equations accounting for both anomalous diffusion and reactions is notoriously difficult, even in the simplest cases. In contrast to normal diffusion, reaction kinetics cannot be incorporated into evolution equations…

Statistical Mechanics · Physics 2020-10-23 Sean D Lawley

In this paper the output feedback energy control problem for the sine-Gordon model is studied. An observer for the sine-Gordon equation and a speed-gradient boundary control law for solving this problem are analysed. Explicit inequalities…

Optimization and Control · Mathematics 2018-01-23 Maksim Dolgopolik , Alexander L. Fradkov , Boris Andrievsky

In many biological situations, a species arriving from a remote source diffuses in a domain confined between two parallel surfaces until it finds a binding partner. Since such a geometric shape falls in between two- and three-dimensional…

Chemical Physics · Physics 2019-11-05 Denis S. Grebenkov , Diego Krapf

A one-dimensional model on a line of the length L is investigated, which involves particle diffusion as well as single particle annihilation. There are also creation and annihilation at the boundaries. The static and dynamical behaviors of…

Mathematical Physics · Physics 2014-03-17 Mohammad Khorrami , Amir Aghamohammadi

In this paper we extend the encounter-based model of diffusion-mediated surface absorption to the case of an unbiased run-and-tumble particle (RTP) confined to a finite interval $[0,L]$ and switching between two constant velocity states…

Statistical Mechanics · Physics 2022-12-07 Paul C Bressloff

We consider a second order singularly perturbed boundary value problem, of reaction-convection-diffusion type with two small parameters, and the approximation of its solution by the $hp$ version of the Finite Element Method on the so-called…

Numerical Analysis · Mathematics 2020-04-20 Irene Sykopetritou , Christos Xenophontos

We consider a model system consisting of two reaction-diffusion equations, where one species diffuses in a volume while the other species diffuses on the surface which surrounds the volume. The two equations are coupled via a nonlinear…

Analysis of PDEs · Mathematics 2017-07-21 Tang Quoc Bao , Klemens Fellner , Evangelos Latos

A multi-phase-field model for the description of the discontinuous precipitation reaction is formulated which takes into account surface diffusion along grain boundaries and interfaces as well as volume diffusion. Simulations reveal that…

Materials Science · Physics 2008-09-04 Lynda Amirouche , Mathis Plapp

In this study, we investigate the dynamics of moving fronts in three-dimensional spaces, which form as a result of in-situ combustion during oil production. This phenomenon is also observed in other contexts, such as various autowave models…

Analysis of PDEs · Mathematics 2025-02-05 Aleksei Liubavin , Mingkang Ni , Ye Zhang , Dmitrii Chaikovskii

In this paper, we propose a novel numerical scheme for solving time-fractional reaction-diffusion problems with Robin boundary conditions, where the time derivative is in the Caputo sense of order $\alpha\in(0,1)$. The existence and…

Numerical Analysis · Mathematics 2025-09-23 Qian Luo , Aiguo Xiao , Xiaoqiang Yan , Jingmin Xia

The paper deals with reaction-diffusion equations involving a hysteretic discontinuity in the source term, which is defined at each spatial point. In particular, such problems describe chemical reactions and biological processes in which…

Analysis of PDEs · Mathematics 2014-04-17 Pavel Gurevich , Roman Shamin , Sergey Tikhomirov

This paper provides a theoretical framework of deriving the forward and backward Feynman-Kac equations for the distribution of functionals of the path of a particle undergoing both diffusion and chemical reaction. Very general forms of the…

Statistical Mechanics · Physics 2018-03-20 Ru Hou , Weihua Deng

This work reviews goal-oriented a posteriori error control, adaptivity and solver control for finite element approximations to boundary and initial-boundary value problems for stationary and non-stationary partial differential equations,…

Numerical Analysis · Mathematics 2024-12-02 Bernhard Endtmayer , Ulrich Langer , Thomas Richter , Andreas Schafelner , Thomas Wick

We consider the inverse problem of reconstructing the posterior measure over the trajec- tories of a diffusion process from discrete time observations and continuous time constraints. We cast the problem in a Bayesian framework and derive…

Machine Learning · Statistics 2016-12-21 Botond Cseke , David Schnoerr , Manfred Opper , Guido Sanguinetti

We prove existence and uniqueness of travelling waves for a reaction-diffusion system coupling a classical reaction-diffusion equation in a strip with a diffusion equation on a line. To do this we use a continuation method which leads to…

Analysis of PDEs · Mathematics 2014-10-20 Laurent Dietrich

We present a generalized model of a diffusion-reaction system where the reaction occurs only on the boundary. This model reduces to that of Barato and Hinrichsen when the occupancy of the boundary site is restricted to zero or one. In the…

Statistical Mechanics · Physics 2010-01-08 S. Burov , David A. Kessler