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Motivation: The multiple sequence alignment (MSA) problem has been extensively studied, with numerous approaches developed over recent years. With the rapid growth of sequence data, there is an increasing need for fast and accurate MSA…

Computational Engineering, Finance, and Science · Computer Science 2026-01-23 Emily G. Light , Morgan Prior , Noah M. Daniels , Najib Ishaq

As large-scale HPC compute clusters increasingly adopt accelerators such as GPUs to meet the voracious demands of modern workloads, these clusters are increasingly becoming power constrained. Unfortunately, modern applications can often…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-10 Rutwik Jain , Yiwei Jiang , Matthew D. Sinclair , Shivaram Venkataraman

In this paper, we present a new approach of distributed clustering for spatial datasets, based on an innovative and efficient aggregation technique. This distributed approach consists of two phases: 1) local clustering phase, where each…

Databases · Computer Science 2018-02-05 Malika Bendechache , Nhien-An Le-Khac , M-Tahar Kechadi

Background: Clustering of nodes in Bayesian Networks (BNs) and related graphical models such as Dynamic BNs (DBNs) has been demonstrated to enhance computational efficiency and improve model learning. It typically involves partitioning the…

Data Structures and Algorithms · Computer Science 2025-12-24 Paul Pao-Yen Wu , Fabrizio Ruggeri , Kerrie Mengersen

A general scheme for divisive hierarchical clustering algorithms is proposed. It is made of three main steps : first a splitting procedure for the subdivision of clusters into two subclusters, second a local evaluation of the bipartitions…

Data Structures and Algorithms · Computer Science 2018-09-07 Maurice Roux

We present a hierarchical maximum-margin clustering method for unsupervised data analysis. Our method extends beyond flat maximum-margin clustering, and performs clustering recursively in a top-down manner. We propose an effective greedy…

Machine Learning · Computer Science 2015-02-09 Guang-Tong Zhou , Sung Ju Hwang , Mark Schmidt , Leonid Sigal , Greg Mori

We propose a novel approach to the problem of multilevel clustering, which aims to simultaneously partition data in each group and discover grouping patterns among groups in a potentially large hierarchically structured corpus of data. Our…

Machine Learning · Statistics 2021-05-26 Viet Huynh , Nhat Ho , Nhan Dam , XuanLong Nguyen , Mikhail Yurochkin , Hung Bui , and Dinh Phung

Multiple signal classification algorithm (MUSICAL) provides a super-resolution microscopy method. In the previous research, MUSICAL has enabled data-parallelism well on a desktop computer or a Linux-based server. However, the running time…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-06-14 Quan Do , Jon Ivar Kristiansen , Krishna Agarwal , Phuong Hoai Ha

Clustering is a NP-hard problem. Thus, no optimal algorithm exists, heuristics are applied to cluster the data. Heuristics can be very resource-intensive, if not applied properly. For substantially large data sets computational efficiencies…

Databases · Computer Science 2020-03-11 Mujahid Sultan

Clustering aims to group unlabelled samples based on their similarities. It has become a significant tool for the analysis of high-dimensional data. However, most of the clustering methods merely generate pseudo labels and thus are unable…

Artificial Intelligence · Computer Science 2023-06-21 Tianyi Huang , Shenghui Cheng , Stan Z. Li , Zhengjun Zhang

This paper presents a novel multicriteria shortest path search algorithm called Hierarchical MLS. The distinguishing feature of the algorithm is the multilayered structure of compressed k-Path-Cover graphs it operates on. In addition to…

Data Structures and Algorithms · Computer Science 2025-03-18 Temirlan Kurbanov , Linxiao Miao , Jiří Vokřínek

In high-dimension, low-sample size (HDLSS) data, it is not always true that closeness of two objects reflects a hidden cluster structure. We point out the important fact that it is not the closeness, but the "values" of distance that…

Machine Learning · Statistics 2013-12-30 Yoshikazu Terada

The paper tackles the problem of clustering multiple networks, directed or not, that do not share the same set of vertices, into groups of networks with similar topology. A statistical model-based approach based on a finite mixture of…

Statistics Theory · Mathematics 2023-11-07 Tabea Rebafka

This paper tries to present a more unified view of clustering, by identifying the relationships between five different clustering algorithms. Some of the results are not new, but they are presented in a cleaner, simpler and more concise…

Machine Learning · Computer Science 2020-06-11 Bernardo A. Gonzalez-Torres

This paper considers clustered multi-task compressive sensing, a hierarchical model that solves multiple compressive sensing tasks by finding clusters of tasks that leverage shared information to mutually improve signal reconstruction. The…

Signal Processing · Electrical Eng. & Systems 2023-10-03 Alexander Lin , Demba Ba

We present a structural clustering algorithm for large-scale datasets of small labeled graphs, utilizing a frequent subgraph sampling strategy. A set of representatives provides an intuitive description of each cluster, supports the…

Databases · Computer Science 2016-10-03 Till Schäfer , Petra Mutzel

We introduce the Huffman-Bucket Sketch (HBS), a simple, mergeable data structure that losslessly compresses a HyperLogLog (HLL) sketch with $m$ registers to optimal space $O(m+\log n)$ bits, with amortized constant-time updates, acting as a…

Data Structures and Algorithms · Computer Science 2026-03-12 Matti Karppa

We present a distributed-memory library for computations with dense structured matrices. A matrix is considered structured if its off-diagonal blocks can be approximated by a rank-deficient matrix with low numerical rank. Here, we use…

Mathematical Software · Computer Science 2015-06-29 François-Henry Rouet , Xiaoye S. Li , Pieter Ghysels , Artem Napov

Crowd counting on static images is a challenging problem due to scale variations. Recently deep neural networks have been shown to be effective in this task. However, existing neural-networks-based methods often use the multi-column or…

Computer Vision and Pattern Recognition · Computer Science 2017-02-09 Lingke Zeng , Xiangmin Xu , Bolun Cai , Suo Qiu , Tong Zhang

High-dimensional datasets often contain multiple meaningful clusterings in different subspaces. For example, objects can be clustered either by color, weight, or size, revealing different interpretations of the given dataset. A variety of…

Machine Learning · Computer Science 2025-04-08 Collin Leiber , Dominik Mautz , Claudia Plant , Christian Böhm