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Weighted digraphs are used to model a variety of natural systems and can exhibit interesting structure across a range of scales. In order to understand and compare these systems, we require stable, interpretable, multiscale descriptors. To…

Algebraic Topology · Mathematics 2024-11-08 Thomas Chaplin , Heather A. Harrington , Ulrike Tillmann

Topological data analysis involves the statistical characterization of the shape of data. Persistent homology is a primary tool of topological data analysis, which can be used to analyze topological features and perform statistical…

Methodology · Statistics 2023-03-01 Chul Moon , Nicole A. Lazar

Persistence diagrams (PDs), often characterized as sets of death and birth of homology class, have been known for providing a topological representation of a graph structure, which is often useful in machine learning tasks. Prior works rely…

Machine Learning · Computer Science 2022-09-29 Chau Pham , Trung Dang , Peter Chin

Many important problems in extremal combinatorics can be stated as certifying polynomial inequalities in graph homomorphism numbers, and in particular, many ask to certify pure binomial inequalities. For a fixed collection of graphs…

Combinatorics · Mathematics 2023-08-14 Maria Dascălu , Annie Raymond

Persistent homology (PH) provides topological descriptors for geometric data, such as weighted graphs, which are interpretable, stable to perturbations, and invariant under, e.g., relabeling. Most applications of PH focus on the…

Machine Learning · Computer Science 2024-02-08 David Loiseaux , Luis Scoccola , Mathieu Carrière , Magnus Bakke Botnan , Steve Oudot

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

Statistical inference for exponential-family models of random graphs with dependent edges is challenging. We stress the importance of additional structure and show that additional structure facilitates statistical inference. A simple…

Statistics Theory · Mathematics 2020-03-13 Michael Schweinberger , Jonathan Stewart

Persistent homology is a popular and useful tool for analysing finite metric spaces, revealing features that can be used to distinguish sets of unlabeled points and as input into machine learning pipelines. The famous stability theorem of…

Computational Geometry · Computer Science 2024-05-10 Philip Smith , Vitaliy Kurlin

We investigate the topologies of random geometric complexes built over random points sampled on Riemannian manifolds in the so-called "thermodynamic" regime. We prove the existence of universal limit laws for the topologies; namely, the…

Probability · Mathematics 2020-11-23 Antonio Auffinger , Antonio Lerario , Erik Lundberg

The paper studies intrinsic geometry in the tropical plane. Tropical structure in the real affine $n$-space is determined by the integer tangent vectors. Tropical isomorphisms are affine transformations preserving the integer lattice of the…

Algebraic Geometry · Mathematics 2024-01-10 Grigory Mikhalkin , Mikhail Shkolnikov

Hyperuniform structures are disordered, correlated systems in which density fluctuations are suppressed at large scales. Such a property generalizes the concept of order in patterns and is relevant across diverse physical systems. We…

Soft Condensed Matter · Physics 2025-09-09 Abel H. G. Milor , Otto Sumray , Heather A. Harrington , Axel Voigt , Marco Salvalaglio

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale…

Algebraic Topology · Mathematics 2024-05-24 Michael Kerber , Florian Russold

This paper presents a unified mathematical framework for inference in graphical models, building on the observation that graphical models are algebraic varieties. From this geometric viewpoint, observations generated from a model are…

Quantitative Methods · Quantitative Biology 2009-11-10 Lior Pachter , Bernd Sturmfels

Persistent homology is a popular method for computing topological features of (metric) data. Standard approaches based on the \v{C}ech or Rips filtration are stable under small perturbations of the data, but highly sensitive to outliers.…

Algebraic Topology · Mathematics 2026-02-27 Pepijn Roos Hoefgeest , Lucas Slot

Determining whether two graphs are isomorphic is a fundamental problem with practical applications in areas such as molecular chemistry or social network analysis, yet it remains a challenging task, with exact solutions often being…

This paper is mainly a semi-tutorial introduction to elementary algebraic topology and its applications to Ising-type models of statistical physics, using graphical models of linear and group codes. It contains new material on systematic…

Information Theory · Computer Science 2018-12-20 G. David Forney

Many real-world networks exhibit hierarchical, tree-like structure and heavy-tailed degree distributions, phenomena not readily captured by standard statistical models for network data. Extensions of the popular continuous latent space…

Methodology · Statistics 2026-05-13 Yiwei Gong , Anna L. Smith , Dena Asta , Catherine A. Calder

Scientific data has been growing in both size and complexity across the modern physical, engineering, life and social sciences. Spatial structure, for example, is a hallmark of many of the most important real-world complex systems, but its…

In a series of articles, we have been developing a theory of tropical diagrams of probability spaces, expecting it to be useful for information optimization problems in information theory and artificial intelligence. In this article, we…

Information Theory · Computer Science 2019-05-17 Rostislav Matveev , Jacobus W. Portegies