Related papers: Approximating Weighted Duo-Preservation in Compara…
We study the Closest Pair Problem in Hamming metric, which asks to find the pair with the smallest Hamming distance in a collection of binary vectors. We give a new randomized algorithm for the problem on uniformly random input…
Magnetic Resonance Imaging (MRI) is a kind of medical imaging technology used for diagnostic imaging of diseases, but its image quality may be suffered by the long acquisition time. The compressive sensing (CS) based strategy may decrease…
We introduce the natural notion of a matching frame in a $2$-dimensional string. A matching frame in a $2$-dimensional $n\times m$ string $M$, is a rectangle such that the strings written on the horizontal sides of the rectangle are…
Recent years have witnessed a tremendous growth using topological summaries, especially the persistence diagrams (encoding the so-called persistent homology) for analyzing complex shapes. Intuitively, persistent homology maps a potentially…
The last decade brought a significant increase in the amount of data and a variety of new inference methods for reconstructing the detailed evolutionary history of various cancers. This brings the need of designing efficient procedures for…
This paper gives poly-logarithmic-round, distributed D-approximation algorithms for covering problems with submodular cost and monotone covering constraints (Submodular-cost Covering). The approximation ratio D is the maximum number of…
In this paper, we introduce the Maximum Matrix Contraction problem, where we aim to contract as much as possible a binary matrix in order to maximize its density. We study the complexity and the polynomial approximability of the problem.…
The Word Mover's Distance (WMD) is a metric that measures the semantic dissimilarity between two text documents by computing the cost of moving all words of a source/query document to the most similar words of a target document optimally.…
Despite much research, hard weighted problems still resist super-polynomial improvements over their textbook solution. On the other hand, the unweighted versions of these problems have recently witnessed the sought-after speedups.…
We study the densest subgraph problem and give algorithms via multiplicative weights update and area convexity that converge in $O\left(\frac{\log m}{\epsilon^{2}}\right)$ and $O\left(\frac{\log m}{\epsilon}\right)$ iterations,…
Sequence classification algorithms, such as SVM, require a definition of distance (similarity) measure between two sequences. A commonly used notion of similarity is the number of matches between $k$-mers ($k$-length subsequences) in the…
We study the problem of how well a tree metric is able to preserve the sum of pairwise distances of an arbitrary metric. This problem is closely related to low-stretch metric embeddings and is interesting by its own flavor from the line of…
Symbol-pair codes introduced by Cassuto and Blaum in 2010 are designed to protect against the pair errors in symbol-pair read channels. One of the central themes in symbol-error correction is the construction of maximal distance separable…
Given a line barrier and a set of mobile sensors distributed in the plane, the Minimizing Maximum Sensor Movement problem (MMSM) for \textcolor{black}{line barrier coverage} is to compute relocation positions for the sensors in the plane…
Frequent pattern mining is a flagship problem in data mining. In its most basic form, it asks for the set of substrings of a given string $S$ of length $n$ that occur at least $\tau$ times in $S$, for some integer $\tau\in[1,n]$. We…
In the Maximum Weight Independent Set of Rectangles problem (MWISR) we are given a weighted set of $n$ axis-parallel rectangles in the plane. The task is to find a subset of pairwise non-overlapping rectangles with the maximum possible…
In this work, a Bayesian approximate message passing algorithm is proposed for solving the multiple measurement vector (MMV) problem in compressive sensing, in which a collection of sparse signal vectors that share a common support are…
Genome rearrangement has been an active area of research in computational comparative genomics for the last three decades. While initially mostly an interesting algorithmic endeavor, now the practical application by applying rearrangement…
The Procrustes matching (PM) problem is the problem of finding the optimal rigid motion and labeling of two point sets so that they are as close as possible. Both rigid and non-rigid shape matching problems can be formulated as PM problems.…
In order to correct the pair-errors generated during the transmission of modern high-density data storage that the outputs of the channels consist of overlapping pairs of symbols, a new coding scheme named symbol-pair code is proposed. The…