Related papers: Answering Spatial Multiple-Set Intersection Querie…
We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…
Let S be a finite, ordered alphabet, and let x = x_1 x_2 ... x_n be a string over S. A "secondary index" for x answers alphabet range queries of the form: Given a range [a_l,a_r] over S, return the set I_{[a_l;a_r]} = {i |x_i \in [a_l;…
Motivated by information retrieval applications, we consider the one-dimensional colored range reporting problem in rank space. The goal is to build a static data structure for sets C_1,...,C_m \subseteq {1,...,sigma} that supports queries…
The Binary Jumbled String Matching problem is defined as: Given a string $s$ over $\{a,b\}$ of length $n$ and a query $(x,y)$, with $x,y$ non-negative integers, decide whether $s$ has a substring $t$ with exactly $x$ $a$'s and $y$ $b$'s.…
We show how to build several data structures of central importance to string processing, taking as input the Burrows-Wheeler transform (BWT) and using small extra working space. Let $n$ be the text length and $\sigma$ be the alphabet size.…
The positional Burrows-Wheeler Transform (PBWT) is commonly used to store haplotype panels compactly in such a way that, given a query haplotype, we can quickly find the set maximal exact matches (SMEMs) between the query and the haplotypes…
Basic path-matchings, introduced by Cunningham and Geelen (FOCS 1996), are a common generalization of matroid intersection and non-bipartite matching. The main results of this paper are a new algebraic characterization of basic…
Let $n=hw$, where $h$ and $w$ are integers with $h,w \ge 2$. We determine the set of possible intersection numbers of two $n \times n$ latin squares having the additional `Sudoku' constraint based on a $w \times h$ grid of $h \times w$…
Let $P$ be a set of $n$ colored points. We develop efficient data structures that store $P$ and can answer chromatic $k$-nearest neighbor ($k$-NN) queries. Such a query consists of a query point $q$ and a number $k$, and asks for the color…
While most classical NP-hard graph problems cannot be solved in time $2^{o(n)}$ on general graphs under the Exponential Time Hypothesis (ETH), many exhibit the square-root phenomenon and admit optimal algorithms running in time…
The weighted set multi-cover problem is a fundamental generalization of set cover that arises in data-driven applications where one must select a small, low-cost subset from a large collection of candidates under coverage constraints. In…
Under the word RAM model, we design three data structures that can be constructed in $O(n\sqrt{\lg n})$ time over $n$ points in an $n \times n$ grid. The first data structure is an $O(n\lg^{\epsilon} n)$-word structure supporting orthogonal…
We revisit the classic problem of simplex range searching and related problems in computational geometry. We present a collection of new results which improve previous bounds by multiple logarithmic factors that were caused by the use of…
We revisit the fundamental problem of dictionary look-up with mismatches. Given a set (dictionary) of $d$ strings of length $m$ and an integer $k$, we must preprocess it into a data structure to answer the following queries: Given a query…
In this work, we aim to study when learned models are better hash functions, particular for hash-maps. We use lightweight piece-wise linear models to replace the hash functions as they have small inference times and are sufficiently general…
The operations of data set, such as intersection, union and complement, are the fundamental calculation in mathematics. It's very significant that designing fast algorithm for set operation. In this paper, the quantum algorithm for…
In this paper, we first consider the subpath convex hull query problem: Given a simple path $\pi$ of $n$ vertices, preprocess it so that the convex hull of any query subpath of $\pi$ can be quickly obtained. Previously, Guibas, Hershberger,…
We present a protocol for error characterization and its experimental implementation with 4 qubits in liquid state NMR. The method is designed to retrieve information about spatial correlations and scales as $O(n^w)$, where $w$ is the…
The performance of a dynamic dictionary is measured mainly by its update time, lookup time, and space consumption. In terms of update time and lookup time there are known constructions that guarantee constant-time operations in the worst…
We consider problems related to finding short cycles, small cliques, small independent sets, and small subgraphs in geometric intersection graphs. We obtain a plethora of new results. For example: * For the intersection graph of $n$ line…