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Orchard and tree-child networks share an important property with phylogenetic trees: they can be completely reduced to a single node by iteratively deleting cherries and reticulated cherries. As it is the case with phylogenetic trees, the…

Populations and Evolution · Quantitative Biology 2024-03-22 Tomás M. Coronado , Joan Carles Pons , Gabriel Riera

We consider the problem of uniformly generating a spanning tree, of a connected undirected graph. This process is useful to compute statistics, namely for phylogenetic trees. We describe a Markov chain for producing these trees. For cycle…

Data Structures and Algorithms · Computer Science 2020-07-08 Luís M. S. Russo , Andreia Sofia Teixeira , Alexandre P Francisco

Any function can be constructed using a hierarchy of simpler functions through compositions. Such a hierarchy can be characterized by a binary rooted tree. Each node of this tree is associated with a function which takes as inputs two…

Machine Learning · Computer Science 2019-10-23 Roozbeh Farhoodi , Khashayar Filom , Ilenna Simone Jones , Konrad Paul Kording

In this thesis, we present two approaches to a rigorous mathematical and algorithmic foundation of quantitative and statistical inference in constraint-based natural language processing. The first approach, called quantitative constraint…

Computation and Language · Computer Science 2007-05-23 Stefan Riezler

Most of the syntax-based metrics obtain the similarity by comparing the sub-structures extracted from the trees of hypothesis and reference. These sub-structures are defined by human and can't express all the information in the trees…

Computation and Language · Computer Science 2016-11-07 Hui Yu , Xiaofeng Wu , Wenbin Jiang , Qun Liu , ShouXun Lin

In sentence modeling and classification, convolutional neural network approaches have recently achieved state-of-the-art results, but all such efforts process word vectors sequentially and neglect long-distance dependencies. To exploit both…

Computation and Language · Computer Science 2015-08-04 Mingbo Ma , Liang Huang , Bing Xiang , Bowen Zhou

Number sequences defined by a linear recursion relation are studied by means of generating functions. Indices of the terms in the recursion relation have arbitrary differenses. In addition to formulas for the nth term an algorithm is…

Number Theory · Mathematics 2016-04-04 Bengt Månsson

We describe an algorithm for the sequential sampling of entries in multiway contingency tables with given constraints. The algorithm can be used for computations in exact conditional inference. To justify the algorithm, a theory relates…

Statistics Theory · Mathematics 2007-06-13 Yuguo Chen , Ian H. Dinwoodie , Seth Sullivant

Phylogenetic trees are a central tool in understanding evolution. They are typically inferred from sequence data, and capture evolutionary relationships through time. It is essential to be able to compare trees from different data sources…

Populations and Evolution · Quantitative Biology 2017-10-31 Michelle Kendall , Caroline Colijn

The Matrix-Tree Theorem states that the number of spanning trees of a graph is given by the absolute value of any cofactor of the Laplacian matrix of the graph. We propose a very short proof of this result which amounts to comparing Taylor…

Combinatorics · Mathematics 2023-03-14 Amitai Netser Zernik

To any rooted tree, we associate a sequence of numbers that we call the logarithmic factorials of the tree. This provides a generalization of Bhargava's factorials to a natural combinatorial setting suitable for studying questions around…

Combinatorics · Mathematics 2016-11-08 Omid Amini

We propose a procedure to build a decision tree which approximates the performance of complex machine learning models. This single approximation tree can be used to interpret and simplify the predicting pattern of random forests (RFs) and…

Methodology · Statistics 2016-10-31 Yichen Zhou , Giles Hooker

In this paper, we introduce two families of planar and self-similar graphs which have small-world properties. The constructed models are based on an iterative process where each step of a certain formulation of modules results in a final…

Combinatorics · Mathematics 2024-04-19 Muhammed Alaa Morsy , Mohamed Anwar , Abdallah Aboutahoun

Dependency parsing research, which has made significant gains in recent years, typically focuses on improving the accuracy of single-tree predictions. However, ambiguity is inherent to natural language syntax, and communicating such…

Computation and Language · Computer Science 2018-04-18 Katherine A. Keith , Su Lin Blodgett , Brendan O'Connor

The connection between dependency trees and spanning trees is exploited by the NLP community to train and to decode graph-based dependency parsers. However, the NLP literature has missed an important difference between the two structures:…

Computation and Language · Computer Science 2020-10-08 Ran Zmigrod , Tim Vieira , Ryan Cotterell

Query evaluation in monadic second-order logic (MSO) is tractable on trees and treelike instances, even though it is hard for arbitrary instances. This tractability result has been extended to several tasks related to query evaluation, such…

Databases · Computer Science 2016-07-19 Antoine Amarilli , Pierre Bourhis , Pierre Senellart

We propose a tree-based algorithm for classification and regression problems in the context of functional data analysis, which allows to leverage representation learning and multiple splitting rules at the node level, reducing…

Machine Learning · Statistics 2020-11-03 Edoardo Belli , Simone Vantini

In this paper, we define and study the concept of traceable regressions. These are sequences of regressions in joint or single responses for which a corresponding regression graph captures not only an independence structure but represents,…

Methodology · Statistics 2012-05-09 Nanny Wermuth

Let $c_n$ denote the number of nodes at a distance $n$ from the root of a rooted tree. A criterion for proving the rationality and computing the rational generating function of the sequence $\{c_n\}$ is described. This criterion is applied…

Combinatorics · Mathematics 2014-07-22 Amritanshu Prasad

This article describes a method to build syntactical dependencies starting from the phrase structure parsing process. The goal is to obtain all the information needed for a detailled semantical analysis. Interaction Grammars are used for…

Computation and Language · Computer Science 2010-11-19 Jonathan Marchand , Bruno Guillaume , Guy Perrier