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Motivation: The rapid growth of metagenomics sequencing data makes metagenomics increasingly dependent on computational and statistical methods for fast and efficient analysis. Consequently, novel analysis tools for big-data metagenomics…

Genomics · Quantitative Biology 2022-10-19 Kaoutar Daoud Hiri , Matjaž Hren , Tomaž Curk

Deep learning and big data algorithms have become widely used in industrial applications to optimize several tasks in many complex systems. Particularly, deep learning model for diagnosing and prognosing machinery health has leveraged…

Numerous Fault Localisation (FL) and repair techniques have been proposed to address faults in Deep Learning (DL) models. However, their effectiveness in practical applications remains uncertain due to the reliance on pre-defined rules.…

Software Engineering · Computer Science 2025-06-05 Jinhan Kim , Nargiz Humbatova , Gunel Jahangirova , Shin Yoo , Paolo Tonella

People use large language models (LLMs) when they should not. This is partly because they see LLMs compose poems and answer intricate questions, so they understandably, but incorrectly, assume LLMs won't stumble on basic tasks like simple…

Computation and Language · Computer Science 2025-12-29 Nathan Stringham , Fateme Hashemi Chaleshtori , Xinyuan Yan , Zhichao Xu , Bei Wang , Ana Marasović

Automated optimization modeling via Large Language Models (LLMs) has emerged as a promising approach to assist complex human decision-making. While post-training has become a pivotal technique to enhance LLMs' capabilities in this domain,…

Machine Learning · Computer Science 2026-02-13 Weiting Liu , Han Wu , Yufei Kuang , Xiongwei Han , Tao Zhong , Jianfeng Feng , Wenlian Lu

The exponential growth of volume, variety and velocity of data is raising the need for investigations of automated or semi-automated ways to extract useful patterns from the data. It requires deep expert knowledge and extensive…

Machine Learning · Computer Science 2020-07-22 Abbas Raza Ali , Marcin Budka , Bogdan Gabrys

We propose a novel model for temporal detection and localization which allows the training of deep neural networks using only counts of event occurrences as training labels. This powerful weakly-supervised framework alleviates the burden of…

Machine Learning · Computer Science 2019-05-20 Julien Schroeter , Kirill Sidorov , David Marshall

Embodied agents in safety-critical applications such as Vision-Language Navigation (VLN) rely on multiple interdependent capabilities (e.g., perception, memory, planning, decision), making failures difficult to localize and attribute.…

Multiagent Systems · Computer Science 2026-04-29 Jianming Chen , Yawen Wang , Junjie Wang , Xiaofei Xie , Shoubin Li , Qing Wang , Fanjiang Xu

In this paper, we propose DeepRL4FL, a deep learning fault localization (FL) approach that locates the buggy code at the statement and method levels by treating FL as an image pattern recognition problem. DeepRL4FL does so via novel code…

Software Engineering · Computer Science 2021-03-02 Yi Li , Shaohua Wang , Tien N. Nguyen

Large language models are rapidly transforming social science research by enabling the automation of labor-intensive tasks like data annotation and text analysis. However, LLM outputs vary significantly depending on the implementation…

Computation and Language · Computer Science 2025-10-07 Joachim Baumann , Paul Röttger , Aleksandra Urman , Albert Wendsjö , Flor Miriam Plaza-del-Arco , Johannes B. Gruber , Dirk Hovy

The standard way to teach models is by feeding them lots of data. However, this approach often teaches models incorrect ideas because they pick up on misleading signals in the data. To prevent such misconceptions, we must necessarily…

Machine Learning · Computer Science 2024-08-23 Yoonho Lee , Michelle S. Lam , Helena Vasconcelos , Michael S. Bernstein , Chelsea Finn

Mislabeled samples are ubiquitous in real-world datasets as rule-based or expert labeling is usually based on incorrect assumptions or subject to biased opinions. Neural networks can "memorize" these mislabeled samples and, as a result,…

Machine Learning · Computer Science 2021-11-24 Katharina Rombach , Gabriel Michau , Olga Fink

Authorship attribution refers to the task of automatically determining the author based on a given sample of text. It is a problem with a long history and has a wide range of application. Building author profiles using language models is…

Computation and Language · Computer Science 2016-02-25 Zhenhao Ge , Yufang Sun

Neural NLP models are often miscalibrated and overconfident, assigning high confidence to incorrect predictions and failing to express uncertainty during internal evidence aggregation. This undermines selective prediction and high-stakes…

Artificial Intelligence · Computer Science 2026-03-11 Elias Hossain , Shubhashis Roy Dipta , Subash Neupane , Rajib Rana , Ravid Shwartz-Ziv , Ivan Garibay , Niloofar Yousefi

Selective forgetting or removing information from deep neural networks (DNNs) is essential for continual learning and is challenging in controlling the DNNs. Such forgetting is crucial also in a practical sense since the deployed DNNs may…

Machine Learning · Statistics 2021-01-01 Tomohiro Hayase , Suguru Yasutomi , Takashi Katoh

In this work, we propose a two-stage method for named entity recognition (NER), especially for nested NER. We borrowed the idea from the two-stage Object Detection in computer vision and the way how they construct the loss function. First,…

Computation and Language · Computer Science 2021-01-28 Bing Li

This paper presents the first attempt, up to our knowledge, to classify English writing styles on this scale with the challenge of classifying day to day language written by writers with different backgrounds covering various areas of…

Computation and Language · Computer Science 2017-04-26 Yanging Chen , Rami Al-Rfou' , Yejin Choi

Large Language Models (LLMs) perform well on reasoning benchmarks but often fail when inputs alter slightly, raising concerns about the extent to which their success relies on memorization. This issue is especially acute in Chain-of-Thought…

Computation and Language · Computer Science 2025-08-22 Huihan Li , You Chen , Siyuan Wang , Yixin He , Ninareh Mehrabi , Rahul Gupta , Xiang Ren

Extracting commonsense knowledge from a large language model (LLM) offers a path to designing intelligent robots. Existing approaches that leverage LLMs for planning are unable to recover when an action fails and often resort to retrying…

Artificial Intelligence · Computer Science 2024-03-12 Shreyas Sundara Raman , Vanya Cohen , Ifrah Idrees , Eric Rosen , Ray Mooney , Stefanie Tellex , David Paulius

Considering the importance of detecting hateful language, labeled hate speech data is expensive and time-consuming to collect, particularly for low-resource languages. Prior work has demonstrated the effectiveness of cross-lingual transfer…

Computation and Language · Computer Science 2025-05-27 Faeze Ghorbanpour , Daryna Dementieva , Alexander Fraser