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Mathematical modelling is a cornerstone of computational biology. While mechanistic models might describe the interactions of interest of a system, they are often difficult to study. On the other hand, abstract models might capture key…

Dynamical Systems · Mathematics 2025-05-01 Lucas Jesus Morales-Moya

This short expository paper outlines applications of computer algebra to the implication problem of conditional independence for Gaussian random variables. We touch on certificates for validity and invalidity of inference rules from the…

Statistics Theory · Mathematics 2022-11-09 Tobias Boege

A variety of computational models have been developed to describe active matter at different length and time scales. The diversity of the methods and the challenges in modeling active matter---ranging from molecular motors and cytoskeletal…

Soft Condensed Matter · Physics 2020-04-21 M Reza Shaebani , Adam Wysocki , Roland G Winkler , Gerhard Gompper , Heiko Rieger

Digital quantum computers provide a computational framework for solving the Schr\"{o}dinger equation for a variety of many-particle systems. Quantum computing algorithms for the quantum simulation of these systems have recently witnessed…

Quantum Physics · Physics 2022-03-21 Mario Motta , Julia Rice

We show how to adjust the parameters of a thermodynamic computer by gradient descent in order to perform a desired computation at a specified observation time. Within a digital simulation of a thermodynamic computer, training proceeds by…

Statistical Mechanics · Physics 2025-09-22 Stephen Whitelam

xloops is a program package that calculates Feynman diagrams by using computer algebra systems. In this paper it is shown which problems to be solved by computer algebra arise during such calculations, and how this problems are handled in…

High Energy Physics - Phenomenology · Physics 2007-05-23 Lars Brucher

We demonstrate how methods in Functional Programming can be used to implement a computer algebra system. As a proof-of-concept, we present the computational-algebra package. It is a computer algebra system implemented as an embedded…

Symbolic Computation · Computer Science 2018-10-02 Hiromi Ishii

In this paper I present a first attempt for a possible description of fluids dynamics by mean of a cellular automata technique. With the use of simple and elementary rules, based on random behaviour either, the model permits to obtain the…

Computational Complexity · Computer Science 2007-05-23 Gianluca Argentini

The article describes various aspects of mathematical modeling of fluid flows, both in general and with reference to hydraulic machinery. The article reviews historical development of corresponding methods of mathematical modeling.…

Fluid Dynamics · Physics 2007-05-23 Alexey N. Kochevsky , Victor G. Nenya

Analog computers can be revived as a feasible technology platform for low precision, energy efficient and fast computing. We justify this statement by measuring the performance of a modern analog computer and comparing it with that of…

Computational Physics · Physics 2021-12-20 Sven Köppel , Bernd Ulmann , Lars Heimann , Dirk Killat

Crystallization is a key step in macromolecular structure determination by crystallography. While a robust theoretical treatment of the process is available, due to the complexity of the system, the experimental process is still largely one…

Biomolecules · Quantitative Biology 2016-08-02 Irem Altan , Patrick Charbonneau , Edward H. Snell

Computer models are commonly used to represent a wide range of real systems, but they often involve some unknown parameters. Estimating the parameters by collecting physical data becomes essential in many scientific fields, ranging from…

Applications · Statistics 2020-05-27 Chih-Li Sung , Beau David Barber , Berkley J. Walker

Convenient and simple numerical techniques for performing quantum computations based on matrix representations of Hilbert space operators are presented and illustrated by various examples. The applications include the calculations of…

Quantum Physics · Physics 2016-08-15 H J Korsch , K Rapedius

This paper summarizes the essential functionality of the computer algebra package HarmonicSums. On the one hand HarmonicSums can work with nested sums such as harmonic sums and their generalizations and on the other hand it can treat…

Symbolic Computation · Computer Science 2014-07-24 Jakob Ablinger

Port-based network modeling of multi-physics problems leads naturally to a formulation as port-Hamiltonian differential-algebraic system. In this way, the physical properties are directly encoded in the structure of the model. Since the…

Optimization and Control · Mathematics 2024-12-20 Sarah-Alexa Hauschild , Nicole Marheineke , Volker Mehrmann

The main purpose of this paper is to propose six programs in C++ for matrix computations and solving recurrent equations systems with entries in min plus algebra.

Rings and Algebras · Mathematics 2013-06-25 Mihai Ivan , Gheorghe Ivan

Clifford algebras have broad applications in science and engineering. The use of Clifford algebras can be further promoted in these fields by availability of computational tools that automate tedious routine calculations. We offer an…

Symbolic Computation · Computer Science 2016-05-23 Dimiter Prodanov , Viktor T. Toth

equilibrium-c (eqc) is a program for computing the composition of gas mixtures in chemical equilibrium. In typical usage, the program is given a known thermodynamic state, such as fixed temperature and pressure, as well as an initial…

Computational Engineering, Finance, and Science · Computer Science 2024-12-11 Nicholas N. Gibbons

We describe algorithms for computing geometric invariants for Hilbert modular surfaces, and we report on their implementation.

The fundamental problem faced in quantum chemistry is the calculation of molecular properties, which are of practical importance in fields ranging from materials science to biochemistry. Within chemical precision, the total energy of a…