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This paper discusses the problem of learning language from unprocessed text and speech signals, concentrating on the problem of learning a lexicon. In particular, it argues for a representation of language in which linguistic parameters…

cmp-lg · Computer Science 2008-02-03 Carl de Marcken

First steps towards developing a new perturbation theory for molecular liquids are taken. By choosing a new form of splitting the site-site potential functions between molecules, we will get a set of atomic fluids as the reference system…

Chemical Physics · Physics 2017-11-21 Mehrdad Khanpour

Molecule and text representation learning has gained increasing interest due to its potential for enhancing the understanding of chemical information. However, existing models often struggle to capture subtle differences between molecules…

Machine Learning · Computer Science 2025-10-31 Hyuntae Park , Yeachan Kim , SangKeun Lee

Capturing the structural changes that molecules undergo during chemical reactions in real space and time is a long-standing dream and an essential prerequisite for understanding and ultimately controlling femtochemistry. A key approach to…

The first step in the construction of a regression model or a data-driven analysis, aiming to predict or elucidate the relationship between the atomic scale structure of matter and its properties, involves transforming the Cartesian…

To build intelligent machine learning systems, there are two broad approaches. One approach is to build inherently interpretable models, as endeavored by the growing field of causal representation learning. The other approach is to build…

Machine Learning · Computer Science 2024-12-10 Goutham Rajendran , Simon Buchholz , Bryon Aragam , Bernhard Schölkopf , Pradeep Ravikumar

We present a computational scheme for predicting the ligands that bind to a pocket of known structure. It is based on the generation of a general abstract representation of the molecules, which is invariant to rotations, translations and…

Chemical Physics · Physics 2024-05-09 R. Beccaria , A. Lazzeri , G. Tiana

The discovery of new energetic materials remains a pressing challenge hindered by limited availability of high-quality data. To address this, we have developed generative molecular language models that have been pretrained on extensive…

We investigate the capacity of mechanisms for compositional semantic parsing to describe relations between sentences and semantic representations. We prove that in order to represent certain relations, mechanisms which are syntactically…

Computation and Language · Computer Science 2019-06-28 Antoine Venant , Alexander Koller

Large-language models are capable of completing a variety of tasks, but remain unpredictable and intractable. Representation engineering seeks to resolve this problem through a new approach utilizing samples of contrasting inputs to detect…

Artificial Intelligence · Computer Science 2025-02-26 Lukasz Bartoszcze , Sarthak Munshi , Bryan Sukidi , Jennifer Yen , Zejia Yang , David Williams-King , Linh Le , Kosi Asuzu , Carsten Maple

We call attention on the fact that recent unprecedented technological achievements, in particular in the field of quantum optics, seem to open the way to new experimental tests which might be relevant both for the foundational problems of…

Quantum Physics · Physics 2009-10-31 GianCarlo Ghirardi

The success of language models, especially transformer-based architectures, has trickled into other domains giving rise to "scientific language models" that operate on small molecules, proteins or polymers. In chemistry, language models…

Chemical Physics · Physics 2024-10-22 Nikita Janakarajan , Tim Erdmann , Sarath Swaminathan , Teodoro Laino , Jannis Born

Understanding the geometry and topology of configuration or conformational spaces of molecules has relevant applications in chemistry and biology such as the proteins folding problem, drug design and the structure activity relationship…

Quantitative Methods · Quantitative Biology 2019-07-19 Ingrid Membrillo-Solis , Mariam Pirashvili , Lee Steinberg , Jacek Brodzki , Jeremy G. Frey

Face segmentation is the task of densely labeling pixels on the face according to their semantics. While current methods place an emphasis on developing sophisticated architectures, use conditional random fields for smoothness, or rather…

Computer Vision and Pattern Recognition · Computer Science 2020-03-31 Iacopo Masi , Joe Mathai , Wael AbdAlmageed

Deep Learning (DL) algorithms hold great promise for applications in the field of computational biophysics. In fact, the vast amount of available molecular structures, as well as their notable complexity, constitutes an ideal context in…

Soft Condensed Matter · Physics 2019-01-07 Marco Giulini , Raffaello Potestio

In molecular communications, the direct detection of signaling molecules may be challenging due to a lack of suitable sensors and interference in the environment. Motivated by research in molecular biology, we investigate an indirect…

Information Theory · Computer Science 2022-04-25 Trang Ngoc Cao , Vahid Jamali , Wayan Wicke , Phee Lep Yeoh , Nikola Zlatanov , Jamie S Evans , Robert Schober

Massive data collection holds the promise of a better understanding of complex phenomena and, ultimately, better decisions. Representation learning has become a key driver of deep learning applications, as it allows learning latent spaces…

Machine Learning · Computer Science 2025-11-10 Caroline Uhler , Jiaqi Zhang

Autonomous systems face the intricate challenge of navigating unpredictable environments and interacting with external objects. The successful integration of robotic agents into real-world situations hinges on their perception capabilities,…

Robotics · Computer Science 2025-02-10 Enrico Donato , Thomas George Thuruthel , Egidio Falotico

The flavor is the focal point in the flavor industry, which follows social tendencies and behaviors. The research and development of new flavoring agents and molecules are essential in this field. On the other hand, the development of…

Identifying the chemical structure from a graphical representation, or image, of a molecule is a challenging pattern recognition task that would greatly benefit drug development. Yet, existing methods for chemical structure recognition do…

Computer Vision and Pattern Recognition · Computer Science 2024-04-03 Martijn Oldenhof , Edward De Brouwer , Adam Arany , Yves Moreau
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