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Natural phenomena frequently involve a very large number of interacting molecules moving in confined regions of space. Cellular transport by motor proteins is an example of such collective behavior. We derive a deterministic compartmental…

Subcellular Processes · Quantitative Biology 2017-11-01 Yoram Zarai , Michael Margaliot , Anatoly B. Kolomeisky

A central question in developmental biology is how size and position are determined. The genetic code carries instructions on how to control these properties in order to regulate the pattern and morphology of structures in the developing…

Cell Behavior · Quantitative Biology 2016-12-05 Krishna Garikipati

Near-term prediction of the structured spatio-temporal processes driving our climate is of profound importance to the safety and well-being of millions, but the prounced nonlinear convection of these processes make a complete mechanistic…

Computational Physics · Physics 2020-06-30 Daniel J. Tait

Based on symmetry consideration of migration and shape deformations, we formulate phenomenologically the dynamics of cell crawling in two dimensions. Forces are introduced to change the cell shape. The shape deformations induce migration of…

Biological Physics · Physics 2016-03-23 Takao Ohta , Mitsusuke Tarama , Masaki Sano

This paper studies spatial patterns formed by proximate population migration driven by real wage gradients and other idiosyncratic factors. The model consists of a tractable core-periphery model incorporating a quasi-linear log utility…

Theoretical Economics · Economics 2025-07-23 Kensuke Ohtake

The spatial heterogeneity of cities -- the uneven distribution of population and activities -- is fundamental to urban dynamics and related to critical issues such as infrastructure overload, housing affordability, and social inequality.…

Physics and Society · Physics 2025-11-14 Hao Huang , Yuming Lin , Jiazhen Liu

Symmetry-breaking instabilities play an important role in understanding the mechanisms underlying the diversity of patterns observed in nature, such as in Turing's reaction--diffusion theory, which connects cellular signalling and transport…

Pattern Formation and Solitons · Physics 2023-12-25 Andrew L. Krause , Eamonn A. Gaffney , Thomas Jun Jewell , Václav Klika , Benjamin J. Walker

We have developed a set of numerical tools for the quantitative analysis of defect dynamics in quasiperiodic structures. We have applied these tools to study dislocation motion in the dynamical equation of Lifshitz and Petrich [Phys. Rev.…

Materials Science · Physics 2009-11-11 Gilad Barak , Ron Lifshitz

We study a one-dimensional model of a dislocation pileup driven by an external stress and interacting with random quenched disorder, focusing on predictability of the plastic deformation process. Upon quasistatically ramping up the…

Materials Science · Physics 2020-12-21 Mika Sarvilahti , Audun Skaugen , Lasse Laurson

Materials are often heterogeneous at various length scales, with variations in grain structure, defects, and composition which has a strong influence on the emergent macroscopic plastic behavior. In particular, heterogeneities lead to…

Materials Science · Physics 2024-06-17 Dénes Berta , David Kurunczi-Papp , Lasse Laurson , Péter Dusán Ispánovity

Discontinuous dynamical systems with grazing solutions are discussed. The group property, continuation of solutions, continuity and smoothness of motions are thoroughly analyzed. A variational system around a grazing solution which depends…

Dynamical Systems · Mathematics 2016-04-20 Marat Akhmet , Aysegul Kivilcim

We provide a comprehensive theoretical framework to study how crystal dislocations influence the functional properties of materials, based on the idea of quantized dislocation, namely a "dislon". In contrast to previous work on dislons…

Materials Science · Physics 2018-03-14 Mingda Li , Yoichiro Tsurimaki , Qingping Meng , Nina Andrejevic , Yimei Zhu , Gerald D. Mahan , Gang Chen

Fatigue simulation requires accurate modeling of unloading and reloading. However, classical ductile damage models treat deformations after complete failure as irrecoverable -- which leads to unphysical behavior during unloading. This…

Computational Engineering, Finance, and Science · Computer Science 2023-12-06 Leon Herrmann , Alireza Daneshyar , Stefan Kollmannsberger

We consider the general problem of determining the steady state of stochastic nonequilibrium systems such as those that have been used to model (among other things) biological transport and traffic flow. We begin with a broad overview of…

Statistical Mechanics · Physics 2009-11-13 R. A. Blythe , M. R. Evans

Theories of localised pattern formation are important to understand a broad range of natural patterns, but are less well-understood than more established mechanisms of domain-filling pattern formation. Here, we extend recent work on pattern…

Pattern Formation and Solitons · Physics 2025-07-22 Andrew L. Krause , Václav Klika , Edgardo Villar-Sepúlveda , Alan R. Champneys , Eamonn A. Gaffney

In this paper, we study the traveling wave solutions to the density-suppressed motility model describing the ``self-trapping'' mechanism that induces spatio-temporal pattern formations observed in the experiment. We establish the existence…

Analysis of PDEs · Mathematics 2020-06-24 Jing Li , Zhi-An Wang

Single and collective cell migration are fundamental processes critical for physiological phenomena ranging from embryonic development and immune response to wound healing and cancer metastasis. To understand cell migration from a physical…

Biological Physics · Physics 2023-10-10 David B. Brückner , Chase P. Broedersz

Intracellular transport processes driven by molecular motors can be described by stochastic lattice models of self-driven particles. Here we focus on bidirectional transport models excluding the exchange of particles on the same track. We…

Biological Physics · Physics 2015-05-27 M. Ebbinghaus , C. Appert-Rolland , L. Santen

Micro-plasticity theories and models are suitable to explain and predict mechanical response of devices on length scales where the influence of the carrier of plastic deformation - the dislocations - cannot be neglected or completely…

Materials Science · Physics 2015-06-10 Stefan Sandfeld , Ekkachai Thawinan , Christian Wieners

The continuum theory of dislocations, as developed predominantly by Kr\"oner and Kosevich, views each dislocation as a source of incompatibility of strains. We show that this concept can be employed efficiently in the Landau free energy…

Materials Science · Physics 2010-07-19 R. Gröger , T. Lookman
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