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We introduce an explainability method for biomedical hypothesis generation systems, built on top of the novel Hypothesis Generation Context Retriever framework. Our approach combines semantic graph-based retrieval and relevant…

Information Retrieval · Computer Science 2025-11-11 Ilya Tyagin , Saeideh Valipour , Aliaksandra Sikirzhytskaya , Michael Shtutman , Ilya Safro

This paper addresses a novel task of detecting sub-topic correspondence in a pair of text fragments, enhancing common notions of text similarity. This task is addressed by coupling corresponding term subsets through bipartite clustering.…

Computation and Language · Computer Science 2007-05-23 Zvika Marx , Ido Dagan , Eli Shamir

Complementary product recommendation is a powerful strategy to improve customer experience and retail sales. However, recommending the right product is not a simple task because of the noisy and sparse nature of user-item interactions. In…

Information Retrieval · Computer Science 2025-06-12 Leandro Anghinoni , Pablo Zivic , Jorge Adrian Sanchez

Although the bipartite shopping graphs are straightforward to model search behavior, they suffer from two challenges: 1) The majority of items are sporadically searched and hence have noisy/sparse query associations, leading to a…

Information Retrieval · Computer Science 2022-11-30 Yan Han , Edward W Huang , Wenqing Zheng , Nikhil Rao , Zhangyang Wang , Karthik Subbian

Keyphrase Prediction (KP) task aims at predicting several keyphrases that can summarize the main idea of the given document. Mainstream KP methods can be categorized into purely generative approaches and integrated models with extraction…

Computation and Language · Computer Science 2021-09-01 Huanqin Wu , Wei Liu , Lei Li , Dan Nie , Tao Chen , Feng Zhang , Di Wang

Researchers usually come up with new ideas only after thoroughly comprehending vast quantities of literature. The difficulty of this procedure is exacerbated by the fact that the number of academic publications is growing exponentially. In…

Computation and Language · Computer Science 2023-06-06 Yi Xu , Shuqian Sheng , Bo Xue , Luoyi Fu , Xinbing Wang , Chenghu Zhou

The effect of bias on hypothesis formation is characterized for an automated data-driven projection pursuit neural network to extract and select features for binary classification of data streams. This intelligent exploratory process…

Machine Learning · Computer Science 2022-01-05 John Patterson , Chris Avery , Tyler Grear , Donald J. Jacobs

Link prediction is a crucial problem in graph-structured data. Due to the recent success of graph neural networks (GNNs), a variety of GNN-based models were proposed to tackle the link prediction task. Specifically, GNNs leverage the…

Machine Learning · Computer Science 2022-12-06 Kaiwen Dong , Yijun Tian , Zhichun Guo , Yang Yang , Nitesh V. Chawla

In a citation graph, adjacent paper nodes share related scientific terms and topics. The graph thus conveys unique structure information of document-level relatedness that can be utilized in the paper summarization task, for exploring…

Computation and Language · Computer Science 2022-12-09 Xiuying Chen , Mingzhe Li , Shen Gao , Rui Yan , Xin Gao , Xiangliang Zhang

In view of the paradigm shift that makes science ever more data-driven, in this thesis we propose a synthesis method for encoding and managing large-scale deterministic scientific hypotheses as uncertain and probabilistic data. In the form…

Databases · Computer Science 2015-02-13 Bernardo Gonçalves

Link prediction aims to uncover missing links or predict the emergence of future relationships according to the current networks structure. Plenty of algorithms have been developed for link prediction in unweighted networks, with only a…

Social and Information Networks · Computer Science 2015-09-22 Jing Zhao , Lili Miao , Haiyang Fang , Qian-Ming Zhang , Min Nie , Tao Zhou

Computational synthesis planning approaches have achieved recent success in organic chemistry, where tabulated synthesis procedures are readily available for supervised learning. The syntheses of inorganic materials, however, exist…

Computation and Language · Computer Science 2017-11-29 Sheshera Mysore , Edward Kim , Emma Strubell , Ao Liu , Haw-Shiuan Chang , Srikrishna Kompella , Kevin Huang , Andrew McCallum , Elsa Olivetti

Besides finding trends and unveiling typical patterns, modern information retrieval is increasingly more interested in the discovery of surprising information in textual datasets. In this work we focus on finding "unexpected links" in…

Social and Information Networks · Computer Science 2016-04-04 Paolo Boldi , Corrado Monti

We demonstrate how analysis of co-clustering in bipartite networks may be used as a bridge to connect, compare and complement clustering results about community structure in two different spaces: single-mode bipartite network projections.…

Digital Libraries · Computer Science 2020-03-24 Vasyl Palchykov , Yurij Holovatch

Physics is one of the most successful endeavors in science. Being a prototypic big science it also reflects the growing tendency for scientific collaborations. Utilizing 250,000 papers from ArXiv.org a prepublishing platform prevalent in…

Physics and Society · Physics 2016-10-04 Raphael H. Heiberger , Oliver J. Wieczorek

Link prediction is a paradigmatic problem in network science with a variety of applications. In latent space network models this problem boils down to ranking pairs of nodes in the order of increasing latent distances between them. The…

Physics and Society · Physics 2020-11-03 Maksim Kitsak , Ivan Voitalov , Dmitri Krioukov

Images and text co-occur constantly on the web, but explicit links between images and sentences (or other intra-document textual units) are often not present. We present algorithms that discover image-sentence relationships without relying…

Computation and Language · Computer Science 2019-09-04 Jack Hessel , Lillian Lee , David Mimno

Link prediction, the problem of identifying missing links among a set of inter-related data entities, is a popular field of research due to its application to graph-like domains. Producing consistent evaluations of the performance of the…

Social and Information Networks · Computer Science 2016-11-28 Dario Garcia-Gasulla , Eduard Ayguadé , Jesús Labarta , Ulises Cortés

An active research line within the broader field of network science is the one concerning link prediction. Close in scope to network reconstruction, link prediction targets specific connections with the aim of uncovering the missing ones,…

Physics and Society · Physics 2026-02-02 Francesca Santucci , Giulio Cimini , Tiziano Squartini

Graphs and networks provide a canonical representation of relational data, with massive network data sets becoming increasingly prevalent across a variety of scientific fields. Although tools from mathematics and computer science have been…

Methodology · Statistics 2014-08-11 Benjamin P. Olding , Patrick J. Wolfe