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Graph Neural Networks (GNNs) have shown remarkable performance in structured data modeling tasks such as node classification. However, mainstream approaches generally rely on a large number of trainable parameters and fixed aggregation…

Machine Learning · Computer Science 2026-02-17 Mingyue Kong , Yinglong Zhang , Chengda Xu , Xuewen Xia , Xing Xu

Semantic similarity measures (SSMs) refer to a set of algorithms used to quantify the similarity of two or more terms belonging to the same ontology. Ontology terms may be associated to concepts, for instance in computational biology gene…

Molecular Networks · Quantitative Biology 2013-05-22 Pietro Hiram Guzzi , Simone Truglia , Pierangelo Veltri , Mario Cannataro

Tensor decomposition has been extensively used as a tool for exploratory analysis. Motivated by neuroscience applications, we study tensor decomposition with Boolean factors. The resulting optimization problem is challenging due to the…

Machine Learning · Computer Science 2020-11-13 Sung-En Chang , Xun Zheng , Ian E. H. Yen , Pradeep Ravikumar , Rose Yu

Boolean circuits form the foundational computational substrate of symmetric cryptography, yet the exploration of their architectural design space has remained largely confined to a handful of canonical paradigms - SPN, Feistel networks, and…

Cryptography and Security · Computer Science 2026-05-01 Arnaud Valence

The state-of-the-art object detection method is complicated with various modules such as backbone, feature fusion neck, RPN and RCNN head, where each module may have different designs and structures. How to leverage the computational cost…

Computer Vision and Pattern Recognition · Computer Science 2019-12-03 Lewei Yao , Hang Xu , Wei Zhang , Xiaodan Liang , Zhenguo Li

We investigate the design of two neural network (NN) architectures recently proposed as decoders for forward error correction: the so-called single-label NN (SLNN) and multi-label NN (MLNN) decoders. These decoders have been reported to…

Signal Processing · Electrical Eng. & Systems 2025-03-25 Yunus Can Gültekin , Péter Scheepers , Yuncheng Yuan , Federico Corradi , Alex Alvarado

In this paper we study a family of discrete configuration spaces, the so-called protocol complexes, which are of utmost importance in theoretical distributed computing. Specifically, we consider questions of the existance of compliant…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-27 D. N. Kozlov

With the increasing adoption of Deep Neural Network (DNN) models as integral parts of software systems, efficient operational testing of DNNs is much in demand to ensure these models' actual performance in field conditions. A challenge is…

Software Engineering · Computer Science 2019-06-28 Zenan Li , Xiaoxing Ma , Chang Xu , Chun Cao , Jingwei Xu , Jian Lü

Probabilistic Boolean networks (PBNs) is an important mathematical framework widely used for modelling and analysing biological systems. PBNs are suited for modelling large biological systems, which more and more often arise in systems…

Computational Engineering, Finance, and Science · Computer Science 2016-05-04 Andrzej Mizera , Jun Pang , Qixia Yuan

In the applications of Boolean networks to modeling biological systems, an important computational problem is the detection of the fixed points of these networks. This is an NP-complete problem in general. There have been various attempts…

Quantitative Methods · Quantitative Biology 2014-04-23 Yi Ming Zou

Quantum computing is seeking to realize hardware-optimized algorithms for application-related computational tasks. NP (nondeterministic-polynomial-time) is a complexity class containing many important but intractable problems like the…

Quantum Physics · Physics 2021-08-27 Aonan Zhang , Hao Zhan , Junjie Liao , Kaimin Zheng , Tao Jiang , Minghao Mi , Penghui Yao , Lijian Zhang

Inspired by recent successes with parallel optimization techniques for solving Boolean satisfiability, we investigate a set of strategies and heuristics that aim to leverage parallel computing to improve the scalability of neural network…

Logic in Computer Science · Computer Science 2020-08-24 Haoze Wu , Alex Ozdemir , Aleksandar Zeljić , Ahmed Irfan , Kyle Julian , Divya Gopinath , Sadjad Fouladi , Guy Katz , Corina Pasareanu , Clark Barrett

We study the problem of formal verification of Binarized Neural Networks (BNN), which have recently been proposed as a energy-efficient alternative to traditional learning networks. The verification of BNNs, using the reduction to hardware…

Software Engineering · Computer Science 2018-01-22 Chih-Hong Cheng , Georg Nührenberg , Chung-Hao Huang , Harald Ruess

Learning-based systems are increasingly deployed across various domains, yet the complexity of traditional neural networks poses significant challenges for formal verification. Unlike conventional neural networks, learned Logic Gate…

Machine Learning · Computer Science 2025-09-30 Fabian Kresse , Emily Yu , Christoph H. Lampert , Thomas A. Henzinger

Explainable Graph Neural Networks (GNNs) have been developed and applied to drug-protein binding prediction to identify the key chemical structures in a drug that have active interactions with the target proteins. However, the key…

Biomolecules · Quantitative Biology 2023-09-25 Yang Wang , Zanyu Shi , Timothy Richardson , Kun Huang , Pathum Weerawarna , Yijie Wang

We investigate the proof complexity of systems based on positive branching programs, i.e. non-deterministic branching programs (NBPs) where, for any 0-transition between two nodes, there is also a 1-transition. Positive NBPs compute…

Computational Complexity · Computer Science 2025-03-12 Anupam Das , Avgerinos Delkos

Binary code similarity comparison is a methodology for identifying similar or identical code fragments in binary programs. It is indispensable in fields of software engineering and security, which has many important applications (e.g.,…

Cryptography and Security · Computer Science 2019-07-03 Yikun Hu , Hui Wang , Yuanyuan Zhang , Bodong Li , Dawu Gu

Binarized neural networks (BNNs) are feedforward neural networks with binary weights and activation functions. In the context of using a BNN for classification, the verification problem seeks to determine whether a small perturbation of a…

Machine Learning · Computer Science 2025-10-03 Woojin Kim , James R. Luedtke

Large-scale modern data often involves estimation and testing for high-dimensional unknown parameters. It is desirable to identify the sparse signals, ``the needles in the haystack'', with accuracy and false discovery control. However, the…

Machine Learning · Computer Science 2021-11-08 Junhui Cai , Xu Han , Ya'acov Ritov , Linda Zhao

Finding Boolean functions suitable for cryptographic primitives is a complex combinatorial optimization problem, since they must satisfy several properties to resist cryptanalytic attacks, and the space is very large, which grows super…

Neural and Evolutionary Computing · Computer Science 2022-02-17 Luca Mariot , Stjepan Picek , Domagoj Jakobovic , Marko Djurasevic , Alberto Leporati
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