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Accurate measurements of kinetic rate constants for interacting biomolecules is crucial for understanding the mechanisms underlying intracellular signalling pathways. The magnitude of binding rates plays a very important molecular…

Quantitative Methods · Quantitative Biology 2013-12-02 Hugo B. Brandao , Hussain Sangji , Elvis Pandzic , Susanne Bechstedt , Gary J. Brouhard , Paul W. Wiseman

A quasi 2-dimensional recursive lattice formed by planar elements have been designed to investigate the surface thermodynamics of Ising spin glass system with the aim to study the metastability of supercooled liquids and the ideal glass…

Statistical Mechanics · Physics 2015-02-24 Ran Huang , Purushottam D. Gujrati

We demonstrate that two toric code layers on the square lattice coupled by an Ising interaction display two distinct phases with intrinsic topological order. The second-order quantum phase transition between the weakly-coupled…

Strongly Correlated Electrons · Physics 2021-01-04 R. Wiedmann , L. Lenke , M. R. Walther , M. Mühlhauser , K. P. Schmidt

The glass transition of mesoscopic charged particles in two-dimensional confinement is studied by mode-coupling theory. We consider two types of effective interactions between the particles, corresponding to two different models for the…

Statistical Mechanics · Physics 2015-10-06 Anoosheh Yazdi , Marco Heinen , Alexei Ivlev , Hartmut Löwen , Matthias Sperl

We show that the slowing of the dynamics in simulations of several model glass-forming liquids is equivalent to the hard-sphere glass transition in the low-pressure limit. In this limit, we find universal behavior of the relaxation time by…

Soft Condensed Matter · Physics 2009-12-17 Ning Xu , Thomas K. Haxton , Andrea J. Liu , Sidney R. Nagel

Using numerical simulations, we study the dynamical evolution of particles interacting via competing long-range repulsion and short-range attraction in two dimensions. The particles are compressed using a time-dependent quasi-one…

Soft Condensed Matter · Physics 2017-12-06 D. McDermott , C. J. Olson Reichhardt , C. Reichhardt

We discuss the nonlinear dynamics and fluctuations of interfaces with bending rigidity under the competing attractions of two walls with arbitrary permeabilities. This system mimics the dynamics of confined membranes. We use a two-dimension…

Soft Condensed Matter · Physics 2015-09-02 Thomas Le Goff , Paolo Politi , Olivier Pierre-Louis

We consider the Glauber dynamics for the 2D Ising model in a box of side L, at inverse temperature $\beta$ and random boundary conditions $\tau$ whose distribution P either stochastically dominates the extremal plus phase (hence the…

Probability · Mathematics 2011-12-15 F. Martinelli , F. Toninelli

A one-dimensional Ising model with nearest neighbour interactions is applied to study compaction processes in granular media. An equivalent particle-hole picture is introduced, with the holes being associated to the domain walls of the…

Statistical Mechanics · Physics 2009-11-07 A. Prados , J. Javier Brey

Preparing thermal (Gibbs) states is a common task in physics and computer science. Recent algorithms mimic cooling via system-bath coupling, where the cost is determined by mixing time, akin to classical Metropolis-like algorithms. However,…

Quantum Physics · Physics 2024-12-13 David Gamarnik , Bobak T. Kiani , Alexander Zlokapa

As spin glass materials have extremely slow dynamics, devious numerical methods are needed to study low-temperature states. A simple and fast optimization version of the classical Kasteleyn treatment of the Ising model is described and…

Disordered Systems and Neural Networks · Physics 2008-02-28 Creighton K. Thomas , A. Alan Middleton

We consider the effect of noise on the dynamics generated by volume-preserving maps on a d-dimensional torus. The quantity we use to measure the irreversibility of the dynamics is the dissipation time. We focus on the asymptotic behaviour…

Dynamical Systems · Mathematics 2009-11-10 A. Fannjiang , S. Nonnenmacher , L. Wolowski

We investigate the saturation regime of the condensing symmetric inclusion process on the discrete one-dimensional torus in the thermodynamical limit. In this regime, the total mass concentrates on a finite number of sites, forming…

Probability · Mathematics 2026-05-04 Seonwoo Kim , Claudio Landim

We study a lattice gas model of hard-core particles on a square lattice experiencing nearest neighbour attraction $J$. Each particle has an internal orientation, independent of the others, that point towards one of the four nearest…

Statistical Mechanics · Physics 2024-09-20 Chandraniva Guha Ray , Indranil Mukherjee , P. K. Mohanty

This paper studies the clustering behavior of weakly interacting diffusions under the influence of sufficiently localized attractive interaction potentials on the one-dimensional torus. We describe how this clustering behavior is closely…

Analysis of PDEs · Mathematics 2026-03-18 Nicolai Gerber , Rishabh S. Gvalani , Martin Hairer , Grigorios A. Pavliotis , André Schlichting

We study an interacting particle process on a finite ring with $L$ sites with at most $K$ particles per site, in which particles hop to nearest neighbors with rates given in terms of $t$-deformed integers and asymmetry parameter $q$, where…

Statistical Mechanics · Physics 2025-06-17 Arvind Ayyer , Samarth Misra

We introduce a new quantity to probe the glass transition. This quantity is a linear generalized compressibility which depends solely on the positions of the particles. We have performed a molecular dynamics simulation on a glass forming…

Disordered Systems and Neural Networks · Physics 2009-11-07 Herve M. Carruzzo , Clare C. Yu

We investigate the calorimetric liquid-glass transition by performing simulations of a binary Lennard-Jones mixture in one through four dimensions. Starting at a high temperature, the systems are cooled to T=0 and heated back to the ergodic…

Disordered Systems and Neural Networks · Physics 2009-01-01 Ralf Brüning , Denis A. St-Onge , Steve Patterson , Walter Kob

The glass transition is considered within two toys models, a mean field spin glass and a directed polymer in a correlated random potential. In the spin glass model there occurs a dynamical transition, where the system condenses in a state…

Disordered Systems and Neural Networks · Physics 2009-10-30 Th. M. Nieuwenhuizen

We study bidisperse colloidal suspensions confined within glass microcapillary tubes to model the glass transition in confined cylindrical geometries. We use high speed three-dimensional confocal microscopy to observe particle motions for a…

Soft Condensed Matter · Physics 2013-02-28 Nabiha Saklayen , Gary L. Hunter , Kazem V. Edmond , Eric R. Weeks