Related papers: Multi de Bruijn Sequences
First we generalize the Thue-Morse sequence (the generalized Thue-Morse sequences) by a cyclic permutations and p-adic system, and consider the necessary-sufficient condition that it is non-periodic. Moreover if the generalized Thue-Morse…
We study the binary Ehrenfeucht Mycielski sequence seeking a balance between the number of occurrences of different binary strings. There have been numerous attempts to prove the balance conjecture of the sequence, which roughly states that…
The nodes of the de Bruijn graph B(d,3) consist of all strings of length 3, taken from an alphabet of size d, with edges between words which are distinct substrings of a word of length 4. We give an inductive characterization of the maximum…
The paired de Bruijn graph is an extension of de Bruijn graph incorporating mate pair information for genome assembly proposed by Mevdedev et al. However, unlike in an ordinary de Bruijn graph, not every path or cycle in a paired de Bruijn…
Let $(m, n, k)$ be a tuple of integers with the property that if $i \leq k$, then $m + i$ and $n + i$ have the same radical. Using a result on the abc Conjecture, we bound $k$ from above, improving a result of Balasubramanian, Shorey, and…
This paper provides a comprehensive review of recent advancements in k-mer-based data structures representing collections of several samples (sometimes called colored de Bruijn graphs) and their applications in large-scale sequence indexing…
We apply ideas from the cluster method to q-count the permutations of a multiset according to the number of occurrences of certain generalized patterns, as defined by Babson and Steingrimsson. In particular, we consider those patterns with…
In this study, we apply "r" times the binomial transform to k-Lucas sequence. Also, the Binet formula, summation, generating function of this transform are found using recurrence relation. Finally, we give the properties of iterated…
We prove a number of results, new and old, about the cycle type of a random permutation on S_n. Underlying our analysis is the idea that the number of cycles of size k is roughly Poisson distributed with parameter 1/k. In particular, we…
Base sequences BS(n+1,n) are quadruples of {1,-1}-sequences (A;B;C;D), with A and B of length n+1 and C and D of length n, such that the sum of their nonperiodic autocorrelation functions is a delta-function. The base sequence conjecture,…
We first introduce a family of binary $pq^2$-periodic sequences based on the Euler quotients modulo $pq$, where $p$ and $q$ are two distinct odd primes and $p$ divides $q-1$. The minimal polynomials and linear complexities are determined…
The distributions of the $m$-th longest runs of multivariate random sequences are considered. For random sequences made up of $k$ kinds of letters, the lengths of the runs are sorted in two ways to give two definitions of run length…
The extent to which a sequence of finite length differs from a shifted version of itself is measured by its aperiodic autocorrelations. Of particular interest are sequences whose entries are 1 or -1, called binary sequences, and sequences…
In this paper, we consider a generalization of Horadam sequence {w_n} which is defined by the recurrence w_n = aw_n-1 + cw_n-2; if n is even, w_n = bw_n-1 + cw_n-2; if n is odd with arbitrary initial conditions w_0, w_1 and nonzero real…
The sequence a_1,...,a_m is a common subsequence in the set of permutations S = {p_1,...,p_k} on [n] if it is a subsequence of p_i(1),...,p_i(n) and p_j(1),...,p_j(n) for some distinct p_i, p_j in S. Recently, Beame and Huynh-Ngoc (2008)…
In this paper, given a simple linear recurrence sequence of algebraic numbers, which has either a dominant characteristic root or exactly two characteristic roots of maximal modulus, we give some explicit lower bounds for the index beyond…
Given a subset of size $k$ of a very large universe a randomized way to find this subset could consist of deleting half of the universe and then searching the remaining part. With a probability of $2^{-k}$ one will succeed. By probability…
We prove that the uniform recurrence of morphic sequences is decidable. For this we show that the number of derived sequences of uniformly recurrent morphic sequences is bounded. As a corollary we obtain that uniformly recurrent morphic…
Given several number sequences, determining the longest common subsequence is a classical problem in computer science. This problem has applications in bioinformatics, especially determining transposable genes. Nevertheless, related works…
The Tribonacci sequence is a well-known example of third order recurrence sequence, which belongs to a particular class of recursive sequences. In this article, other generalized Tribonacci sequence is introduced and defined by…