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Evolution can be broadly described in terms of mutations of the genotype and the subsequent selection of the phenotype. The full enumeration of a given genotype-phenotype (GP) map is therefore a powerful technique in examining evolutionary…

Biomolecules · Quantitative Biology 2020-11-30 S. Owen

Machine learning (ML) methods have been widely used in genomic studies. However, genomic data are often held by different stakeholders (e.g. hospitals, universities, and healthcare companies) who consider the data as sensitive information,…

Cryptography and Security · Computer Science 2020-03-03 Cheng Hong , Zhicong Huang , Wen-jie Lu , Hunter Qu , Li Ma , Morten Dahl , Jason Mancuso

This paper describes a methodology for analyzing the evolutionary dynamics of genetic programming (GP) using genealogical information, diversity measures and information about the fitness variation from parent to offspring. We introduce a…

Machine Learning · Computer Science 2021-08-25 Bogdan Burlacu , Michael Affenzeller , Michael Kommenda

Advances in genome sequencing technologies generate massive amounts of sequence data that are increasingly analyzed and shared through public repositories. On-demand infrastructure services on cloud computing platforms enable the processing…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-20 Junseok Park , Eduardo A. Maury , Changhoon Oh , Donghoon Shin , Danielle Denisko , Eunjung Alice Lee

We investigate fundamental decisions in the design of instruction set architectures for linear genetic programs that are used as both model systems in evolutionary biology and underlying solution representations in evolutionary computation.…

Neural and Evolutionary Computing · Computer Science 2013-12-30 David M. Bryson , Charles Ofria

Genetic programming (GP) is a commonly used approach to solve symbolic regression (SR) problems. Compared with the machine learning or deep learning methods that depend on the pre-defined model and the training dataset for solving SR…

Neural and Evolutionary Computing · Computer Science 2022-05-23 Baihe He , Qiang Lu , Qingyun Yang , Jake Luo , Zhiguang Wang

High-performance deep learning depends on efficient tensor programs. In recent years, automatic tensor program optimization, also known as tensor compilation, has emerged as the primary approach to generating efficient tensor programs.…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-18 Hangda Liu , Boyu Diao , Yu Yang , Wenxin Chen , Xiaohui Peng , Yongjun Xu

Genetic algorithms, computer programs that simulate natural evolution, are increasingly applied across many disciplines. They have been used to solve various optimisation problems from neural network architecture search to strategic games,…

Neural and Evolutionary Computing · Computer Science 2021-09-14 Aymeric Vie , Alissa M. Kleinnijenhuis , Doyne J. Farmer

Traceless Genetic Programming (TGP) is a new Genetic Programming (GP) that may be used for solving difficult real-world problems. The main difference between TGP and other GP techniques is that TGP does not explicitly store the evolved…

Neural and Evolutionary Computing · Computer Science 2021-11-30 Mihai Oltean

The deployment of convolutional neural networks is often hindered by high computational and storage requirements. Structured model pruning is a promising approach to alleviate these requirements. Using the VGG-16 model as an example, we…

Machine Learning · Computer Science 2021-07-22 Kongtao Chen , Ken Franko , Ruoxin Sang

TensorX is a Python library for prototyping, design, and deployment of complex neural network models in TensorFlow. A special emphasis is put on ease of use, performance, and API consistency. It aims to make available high-level components…

Machine Learning · Computer Science 2021-01-05 Davide Nunes , Luis Antunes

In a connected world, spare CPU cycles are up for grabs, if you only make its obtention easy enough. In this paper we present a distributed evolutionary computation system that uses the computational capabilities of the ubiquituous web…

Neural and Evolutionary Computing · Computer Science 2024-01-31 Juan Julián Merelo , Pedro A. Castillo , Juan Luis Jiménez Laredo , Antonio M. Mora , Alberto Prieto

For large-scale graph analytics on the GPU, the irregularity of data access and control flow, and the complexity of programming GPUs, have presented two significant challenges to developing a programmable high-performance graph library.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-01-06 Yangzihao Wang , Yuechao Pan , Andrew Davidson , Yuduo Wu , Carl Yang , Leyuan Wang , Muhammad Osama , Chenshan Yuan , Weitang Liu , Andy T. Riffel , John D. Owens

Many recent machine learning models rely on fine-grained dynamic control flow for training and inference. In particular, models based on recurrent neural networks and on reinforcement learning depend on recurrence relations, data-dependent…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-09 Yuan Yu , Martín Abadi , Paul Barham , Eugene Brevdo , Mike Burrows , Andy Davis , Jeff Dean , Sanjay Ghemawat , Tim Harley , Peter Hawkins , Michael Isard , Manjunath Kudlur , Rajat Monga , Derek Murray , Xiaoqiang Zheng

Evolutionary multiobjective optimization (EMO) has made significant strides over the past two decades. However, as problem scales and complexities increase, traditional EMO algorithms face substantial performance limitations due to…

Neural and Evolutionary Computing · Computer Science 2025-07-11 Zhenyu Liang , Hao Li , Naiwei Yu , Kebin Sun , Ran Cheng

Evolutionary computing, particularly genetic algorithm (GA), is a combinatorial optimization method inspired by natural selection and the transmission of genetic information, which is widely used to identify optimal solutions to complex…

Neural and Evolutionary Computing · Computer Science 2024-12-31 Shanqing Yu , Meng Zhou , Jintao Zhou , Minghao Zhao , Yidan Song , Yao Lu , Zeyu Wang , Qi Xuan

GPUs are a key enabler of the revolution in machine learning and high performance computing, functioning as de facto co-processors to accelerate large-scale computation. As the programming stack and tool support have matured, GPUs have also…

Neural and Evolutionary Computing · Computer Science 2020-04-29 Jhe-Yu Liou , Xiaodong Wang , Stephanie Forrest , Carole-Jean Wu

Precise hardware performance models play a crucial role in code optimizations. They can assist compilers in making heuristic decisions or aid autotuners in identifying the optimal configuration for a given program. For example, the…

We describe TensorFlow-Serving, a system to serve machine learning models inside Google which is also available in the cloud and via open-source. It is extremely flexible in terms of the types of ML platforms it supports, and ways to…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-12-29 Christopher Olston , Noah Fiedel , Kiril Gorovoy , Jeremiah Harmsen , Li Lao , Fangwei Li , Vinu Rajashekhar , Sukriti Ramesh , Jordan Soyke

Motivated by a desire to improve on the current state of the art in genetic programming, and aided by recent progress in understanding the computational aspects of evolutionary systems, we describe a process that creates a set of generic…

Neural and Evolutionary Computing · Computer Science 2019-02-19 David Landaeta