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The notion of disentangled autoencoders was proposed as an extension to the variational autoencoder by introducing a disentanglement parameter $\beta$, controlling the learning pressure put on the possible underlying latent representations.…

Machine Learning · Statistics 2017-11-28 Momchil Peychev , Petar Veličković , Pietro Liò

39 detailed mechanisms for combustion of hydrogen, carbon monoxide and methanol are investigated using ReactionKinetics, a Mathematica based package. The obtained results in most cases do not depend on the choice of reaction rate…

Chemical Physics · Physics 2013-08-06 J. Tóth , A. L. Nagy , I. Zsély

Five recently developed chemical kinetics mechanisms for ammonia oxidation are analysed and compared, in the context of homogeneous adiabatic autoignition. The analysis focuses on the ignition delay and is based on the explosive mode that…

Chemical Physics · Physics 2023-04-10 Shahid Rabbani , Dimitris M. Manias , Dimitrios C. Kyritsis , Dimitris A. Goussis

We propose a numerical technique for parameter inference in Markov models of biological processes. Based on time-series data of a process we estimate the kinetic rate constants by maximizing the likelihood of the data. The computation of…

Quantitative Methods · Quantitative Biology 2011-02-15 Aleksandr Andreychenko , Linar Mikeev , David Spieler , Verena Wolf

The prediction of auto-ignition delay times in HCCI engines has risen interest on detailed chemical models. This paper described a validated kinetic mechanism for the oxidation of a model Diesel fuel (n-decane and α-methylnaphthalene).…

Accurate comparisons between theoretical models and experimental data are critical for scientific progress. However, inferred physical model parameters can vary significantly with the chosen physics model, highlighting the importance of…

High Energy Physics - Phenomenology · Physics 2025-10-27 Sunil Jaiswal , Chun Shen , Richard J. Furnstahl , Ulrich Heinz , Matthew T. Pratola

The autoignition delays of mixtures of methyl-cyclohexane (MCH), oxygen, nitrogen, and argon have been studied in a heated rapid compression machine under the conditions $P_C$ = 50 bar, $T_C$ = 690 - 910K. Three different mixture…

Chemical Physics · Physics 2017-06-07 Bryan W. Weber , William J. Pitz , Chih-Jen Sung , Marco Mehl , Emma J. Silke , Alexander C. Davis

Mathematical modeling based on time-delay differential equations is an important tool to study the role of delay in biological systems and to evaluate its impact on the asymptotic behavior of their dynamics. Delays are indeed found in many…

Dynamical Systems · Mathematics 2022-03-25 Abdelmalik Moujahid , Fernando Vadillo

Investigation of the autoignition delay of the butanol isomers has been performed at elevated pressures of 15 bar and 30 bar and low to intermediate temperatures of 680-860 K. The reactivity of the stoichiometric isomers of butanol, in…

Chemical Physics · Physics 2017-06-07 Bryan W. Weber , Chih-Jen Sung

Simulations of pulverised coal combustion rely on various models, required in order to correctly approximate the flow, chemical reactions, and behavior of solid particles. These models, in turn, rely on multiple model parameters, which are…

Chemical Physics · Physics 2021-02-24 Ahmed Hassan , Taraneh Sayadi , Vincent LeChenadec , Heinz Pitsch , Antonio Attili

The inherent behavioral variability exhibited by stochastic biochemical systems makes it a challenging task for human experts to manually analyze them. Computational modeling of such systems helps in investigating and predicting the…

Quantitative Methods · Quantitative Biology 2020-01-14 Arfeen Khalid

Performance models are well-known instruments to understand the scaling behavior of parallel applications. They express how performance changes as key execution parameters, such as the number of processes or the size of the input problem,…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-01 Marcin Copik , Alexandru Calotoiu , Tobias Grosser , Nicolas Wicki , Felix Wolf , Torsten Hoefler

We report the temperature, pressure and composition dependence of some basic properties of model liquid water-methanol mixtures. For this purpose the isobaric-isothermal molecular dynamics computer simulations are employed. Our principal…

Soft Condensed Matter · Physics 2025-04-01 M. Cruz Sanchez , V. Trejos Montoya , O. Pizio

Methyl valerate (C$_6$H$_{12}$O$_2$, methyl pentanoate) is a methyl ester and a relevant surrogate component for biodiesel. In this work, we present ignition delays of methyl valerate measured using a rapid compression machine at a range of…

Chemical Physics · Physics 2017-06-07 Bryan W. Weber , Justin Bunnell , Kamal Kumar , Chih-Jen Sung

A low-dimensional dynamical system is observed in an experiment as a high-dimensional signal; for example, a video of a chaotic pendulums system. Assuming that we know the dynamical model up to some unknown parameters, can we estimate the…

Machine Learning · Statistics 2021-11-24 Ofir Lindenbaum , Amir Sagiv , Gal Mishne , Ronen Talmon

Different simplified and detailed chemical models and their impact on simulations of combustion regimes initiating by the initial temperature gradient in methane/air mixtures are studied. The limits of the regimes of reaction wave…

Chemical Physics · Physics 2018-11-20 Cheng Wang , Chengeng Qian , JianNan Liu , Mikhail A. Liberman

Interpreting data with mathematical models is an important aspect of real-world industrial and applied mathematical modeling. Often we are interested to understand the extent to which a particular set of data informs and constrains model…

Methodology · Statistics 2025-03-06 Matthew J Simpson , Ruth E Baker

We show that in a particular model of catalytic reaction systems, known as the binary polymer model, there is a mathematical invariance between two versions of the model: (1) random catalysis and (2) template-based catalysis. In particular,…

Populations and Evolution · Quantitative Biology 2011-10-06 Wim Hordijk , Mike Steel

A local-sensitivity-analysis technique is employed to generate new skeletal reaction models for methane combustion from the foundational fuel chemistry model (FFCM-1). The sensitivities of the thermo-chemical variables with respect to the…

Chemical Physics · Physics 2023-08-30 Yinmin Liu , Hessam Babaee , Peyman Givi , Harsha Chelliah , Daniel Livescu , Arash Nouri

We perform twenty experiments on an acoustically-forced laminar premixed Bunsen flame and assimilate high-speed footage of the natural emission into a physics-based model containing seven parameters. The experimental rig is a ducted Bunsen…