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An extension to a recently introduced binary neural network is proposed in order to allow the learning of sparse messages, in large numbers and with high memory efficiency. This new network is justified both in biological and informational…

Neural and Evolutionary Computing · Computer Science 2012-08-21 Behrooz Kamary Aliabadi , Claude Berrou , Vincent Gripon , Xiaoran Jiang

The clonal expansion of T cells during an infection is tightly regulated to ensure an appropriate immune response against invading pathogens. Although experiments have mapped the trajectory from expansion to contraction, the interplay…

Dynamical Systems · Mathematics 2021-10-08 Pantea Pooladvand , Peter S. Kim , Barbara Fazekas de St Groth

B cell receptor sequences diversify through mutations introduced by purpose-built cellular machinery. A recent paper has concluded that a "templated mutagenesis" process is a major contributor to somatic hypermutation, and therefore…

Populations and Evolution · Quantitative Biology 2020-07-06 Julia Fukuyama , Branden J Olson , Frederick A Matsen

The recent demonstration of neuromorphic computing with spin-torque nano-oscillators has opened a path to energy efficient data processing. The success of this demonstration hinged on the intrinsic short-term memory of the oscillators. In…

Recent experimental evidence suggests that acute myeloid leukemias may originate from multiple clones of malignant cells. Nevertheless it is not known how the observed clones may differ with respect to cell properties such as proliferation…

Tissues and Organs · Quantitative Biology 2014-10-07 Thomas Stiehl , Natalia Baran , Anthony D. Ho , Anna Marciniak-Czochra

A tumor often consists of multiple cell subpopulations (clones). Current chemo-treatments often target one clone of a tumor. Although the drug kills that clone, other clones overtake it and the tumor reoccurs. Genome sequencing and…

Molecular Networks · Quantitative Biology 2014-09-09 Edwin Wang , Jinfeng Zou , Naif Zaman , Lenore K. Beitel , Mark Trifiro , Miltiadis Paliouras

Stem cells are characterized by their ability to self-renew, as well as to differentiate and give rise to new populations of cells. Stem cell divisions are crucial for generative processes that occur during early development, and later in…

Applications · Statistics 2025-08-29 Haim Bar , Huyen Nguyen , Joanne Conover

The immune system is a cognitive system of complexity comparable to the brain and its computational algorithms suggest new solutions to engineering problems or new ways of looking at these problems. Using immunological principles, a two (or…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 P. J. Costa Branco , J. A. Dente , R. Vilela Mendes

Memories are stored, retained, and recollected through complex, coupled processes operating on multiple timescales. To understand the computational principles behind these intricate networks of interactions we construct a broad class of…

Neurons and Cognition · Quantitative Biology 2015-07-29 Marcus K. Benna , Stefano Fusi

We present and study an agent-based model of T-Cell cross-regulation in the adaptive immune system, which we apply to binary classification. Our method expands an existing analytical model of T-cell cross-regulation (Carneiro et al. in…

Information Retrieval · Computer Science 2015-03-18 Alaa Abi-Haidar , Luis M. Rocha

In this paper we outline initial concepts for an immune inspired algorithm to evaluate price time series data. The proposed solution evolves a short term pool of trackers dynamically through a process of proliferation and mutation, with…

Artificial Intelligence · Computer Science 2010-07-05 William Wilson , Phil Birkin , Uwe Aickelin

In this paper, we propose a mechanism for storing complex patterns within a neural network and subsequently recalling them. This model is based on our work published in 2018(Inazawa, 2018), which we have refined and extended in this work.…

Neural and Evolutionary Computing · Computer Science 2025-04-10 Hiroshi Inazawa

In this paper, we study a model, which was first presented by Bunte and Lapidoth, that mimics the programming operation of memory cells. Under this paradigm we assume that cells are programmed sequentially and individually. The programming…

Information Theory · Computer Science 2019-01-11 Michal Horovitz , Eitan Yaakobi , Eyal En Gad , Jehoshua Bruck

Brain-computer interfaces (BCIs), is ways for electronic devices to communicate directly with the brain. For most medical-type brain-computer interface tasks, the activity of multiple units of neurons or local field potentials is sufficient…

Machine Learning · Computer Science 2022-05-25 Lang Qian , Shengjie Zheng , Chunshan Deng , Cheng Yang , Xiaojian Li

Cellular automata have been useful artificial models for exploring how relatively simple rules combined with spatial memory can give rise to complex emergent patterns. Moreover, studying the dynamics of how rules emerge under artificial…

Cellular Automata and Lattice Gases · Physics 2014-07-11 Theodore P. Pavlic , Alyssa M. Adams , Paul C. W. Davies , Sara Imari Walker

A central feature of vertebrate immune response is affinity maturation, wherein antibody-producing B cells undergo evolutionary selection in microanatomical structures called germinal centers, which form in secondary lymphoid organs upon…

Populations and Evolution · Quantitative Biology 2024-02-15 Bertrand Ottino-Loffler , Gabriel Victora

Modeling the immune system so that its essential functionalities stand out without the need for every molecular or cellular interaction to be taken into account has been challenging for many decades. Two competing approaches have been the…

Cellular Automata and Lattice Gases · Physics 2017-11-13 Kátia K. Cassiano , Valmir C. Barbosa

Neuron models of associative memory provide a new and prospective technology for reliable date storage and patterns recognition. However, even when the patterns are uncorrelated, the efficiency of most known models of associative memory is…

Disordered Systems and Neural Networks · Physics 2007-05-23 B. V. Kryzhanovsky , L. B. Litinskii , A. Fonarev

Learning to solve sequential tasks with recurrent models requires the ability to memorize long sequences and to extract task-relevant features from them. In this paper, we study the memorization subtask from the point of view of the design…

Machine Learning · Computer Science 2020-02-03 Antonio Carta , Alessandro Sperduti , Davide Bacciu

Biomimetics has played a key role in the evolution of artificial neural networks. Thus far, in silico metaphors have been dominated by concepts from neuroscience and cognitive psychology. In this paper we introduce a different type of…

Neural and Evolutionary Computing · Computer Science 2021-07-08 Ren Wang , Tianqi Chen , Stephen Lindsly , Cooper Stansbury , Indika Rajapakse , Alfred Hero