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We present a new, biased Monte Carlo scheme for simulating complex, cyclic peptides. Backbone atoms are equilibrated with a biased rebridging scheme, and side-chain atoms are equilibrated with a look-ahead configurational bias Monte Carlo.…

Biological Physics · Physics 2009-10-31 Minghong G. Wu , Michael W. Deem

In predictive modeling with simulation or machine learning, it is critical to accurately assess the quality of estimated values through output analysis. In recent decades output analysis has become enriched with methods that quantify the…

Methodology · Statistics 2023-10-27 Kimia Vahdat , Sara Shashaani

We compute the critical exponents $\nu$, $\eta$ and $\omega$ of $O(N)$ models for various values of $N$ by implementing the derivative expansion of the nonperturbative renormalization group up to next-to-next-to-leading order [usually…

Statistical Mechanics · Physics 2020-04-30 Gonzalo De Polsi , Ivan Balog , Matthieu Tissier , Nicolás Wschebor

In regimes of low signal strengths and therefore a small signal-to-noise ratio, standard data analysis methods often fail to accurately estimate system properties. We present a method based on Monte Carlo simulations to effectively restore…

We present a new framework to derandomise certain Markov chain Monte Carlo (MCMC) algorithms. As in MCMC, we first reduce counting problems to sampling from a sequence of marginal distributions. For the latter task, we introduce a method…

Data Structures and Algorithms · Computer Science 2023-04-05 Weiming Feng , Heng Guo , Chunyang Wang , Jiaheng Wang , Yitong Yin

The calculation of multivariate normal probabilities is of great importance in many statistical and economic applications. This paper proposes a spherical Monte Carlo method with both theoretical analysis and numerical simulation. First,…

Computation · Statistics 2013-09-16 Huei-Wen Teng , Ming-Hsuan Kang , Cheng-Der Fuh

Sequential Monte Carlo Samplers are a class of stochastic algorithms for Monte Carlo integral estimation w.r.t. probability distributions, which combine elements of Markov chain Monte Carlo methods and importance sampling/resampling…

Probability · Mathematics 2007-05-23 Andreas Eberle , Carlo Marinelli

The study of crossing probabilities - i.e. probabilities of existence of paths crossing rectangles - has been at the heart of the theory of two-dimensional percolation since its beginning. They may be used to prove a number of results on…

Probability · Mathematics 2019-01-25 Hugo Duminil-Copin , Vincent Tassion

For theories with multiple couplings we construct simple expressions for the four-dimensional (or, in general, integer-dimensional) renormalization constants assuming that all divergences are logarithmical. These expressions allow relating…

High Energy Physics - Theory · Physics 2025-12-17 Gleb Kovyrshin , Nikolai Meshcheriakov , Victoria Shatalova , Konstantin Stepanyantz

We study the 3d Ising universality class using the functional renormalisation group. With the help of background fields and a derivative expansion up to fourth order we compute the leading index, the subleading symmetric and anti-symmetric…

High Energy Physics - Theory · Physics 2011-04-22 Daniel F. Litim , Dario Zappalá

We study the crossover from Ising-like to classical critical behavior as a function of the range R of interactions. The power-law dependence on R of several critical amplitudes is calculated from renormalization theory. The results confirm…

Condensed Matter · Physics 2009-10-28 Erik Luijten , Henk W. J. Blöte , Kurt Binder

The theme of the present paper is numerical integration of $C^r$ functions using randomized methods. We consider variance reduction methods that consist in two steps. First the initial interval is partitioned into subintervals and the…

Numerical Analysis · Mathematics 2023-06-21 Leszek Plaskota , Paweł Przybyłowicz , Łukasz Stępień

Conditional Monte Carlo (CMC) has been widely used for sensitivity estimation with discontinuous integrands as a standard simulation technique. A major limitation of using CMC in this context is that finding conditioning variables to ensure…

Probability · Mathematics 2016-03-22 Guiyun Feng , Guangwu Liu

Classical algorithms in numerical analysis for numerical integration (quadrature/cubature) follow the principle of approximate and integrate: the integrand is approximated by a simple function (e.g. a polynomial), which is then integrated…

Numerical Analysis · Mathematics 2018-06-15 Yuji Nakatsukasa

Multivariate normal (MVN) probabilities arise in myriad applications, but they are analytically intractable and need to be evaluated via Monte-Carlo-based numerical integration. For the state-of-the-art minimax exponential tilting (MET)…

Computation · Statistics 2026-01-28 Jian Cao , Matthias Katzfuss

Continuous level Monte Carlo is an unbiased, continuous version of the celebrated multilevel Monte Carlo method. The approximation level is assumed to be continuous resulting in a stochastic process describing the quantity of interest.…

Numerical Analysis · Mathematics 2024-02-19 Cedric Aaron Beschle , Andrea Barth

We study the iteration of block spin transformations in the O(3) symmetric non-linear sigma-model on a two-dimensional square lattice with help of the Monte Carlo method. In contrast to the classical Monte Carlo Renormalization Group…

High Energy Physics - Lattice · Physics 2014-11-17 A. P. Gottlob , M. Hasenbusch , K. Pinn

In this work, we developed an efficient approach to compute ensemble averages in systems with pairwise-additive energetic interactions between the entities. Methods involving full enumeration of the configuration space result in exponential…

Biomolecules · Quantitative Biology 2020-10-13 Arun V. Sathanur , Nathan A. Baker

We consider Monte Carlo approximations to the maximum likelihood estimator in models with intractable norming constants. This paper deals with adaptive Monte Carlo algorithms, which adjust control parameters in the course of simulation. We…

Methodology · Statistics 2016-12-08 Blazej Miasojedow , Wojciech Niemiro , Jan Palczewski , Wojciech Rejchel

Efficient sampling of complex high-dimensional probability distributions is a central task in computational science. Machine learning methods like autoregressive neural networks, used with Markov chain Monte Carlo sampling, provide good…

Statistical Mechanics · Physics 2021-11-11 Dian Wu , Riccardo Rossi , Giuseppe Carleo
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