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Introduction: The extracellular matrix (ECM) is a networkof proteins and carbohydrates that has a structural and bio-chemical function. The ECM plays an important role in dif-ferentiation, migration and signaling. Several studies…

Quantitative Methods · Quantitative Biology 2022-02-17 Mohamed Ghafoor , Anh Nguyen

Rapid progress in deep learning has spurred its application to bioinformatics problems including protein structure prediction and design. In classic machine learning problems like computer vision, progress has been driven by standardized…

Biomolecules · Quantitative Biology 2019-02-04 Mohammed AlQuraishi

Due to the advent of modern embedded systems and mobile devices with constrained resources, there is a great demand for incredibly efficient deep neural networks for machine learning purposes. There is also a growing concern of privacy and…

Computer Vision and Pattern Recognition · Computer Science 2021-12-02 Priyank Kalgaonkar , Mohamed El-Sharkawy

Classification of EEG signals using shallow Convolutional Neural Networks (CNNs) is a prevalent and successful approach across a variety of fields. Most of these models use independent one-dimensional (1D) convolutional layers along the…

Machine Learning · Computer Science 2026-05-06 Laurits Dixen , Stefan Heinrich , Paolo Burelli

Predicting protein properties such as solvent accessibility and secondary structure from its primary amino acid sequence is an important task in bioinformatics. Recently, a few deep learning models have surpassed the traditional window…

Machine Learning · Computer Science 2016-05-11 Zeming Lin , Jack Lanchantin , Yanjun Qi

The purpose of this study is to determine whether current video datasets have sufficient data for training very deep convolutional neural networks (CNNs) with spatio-temporal three-dimensional (3D) kernels. Recently, the performance levels…

Computer Vision and Pattern Recognition · Computer Science 2018-04-03 Kensho Hara , Hirokatsu Kataoka , Yutaka Satoh

Accurate localization of proteins from fluorescence microscopy images is challenging due to the inter-class similarities and intra-class disparities introducing grave concerns in addressing multi-class classification problems. Conventional…

Computer Vision and Pattern Recognition · Computer Science 2021-10-11 Muhammad Tahir , Saeed Anwar , Ajmal Mian , Abdul Wahab Muzaffar

Hyperspectral imagery is rich in spatial and spectral information. Using 3D-CNN can simultaneously acquire features of spatial and spectral dimensions to facilitate classification of features, but hyperspectral image information spectral…

Image and Video Processing · Electrical Eng. & Systems 2022-02-15 Guandong Li , Chunju Zhang

After the incredible success of deep learning in the computer vision domain, there has been much interest in applying Convolutional Network (ConvNet) features in robotic fields such as visual navigation and SLAM. Unfortunately, there are…

Robotics · Computer Science 2015-07-30 Niko Sünderhauf , Feras Dayoub , Sareh Shirazi , Ben Upcroft , Michael Milford

3D shape is a crucial but heavily underutilized cue in today's computer vision systems, mostly due to the lack of a good generic shape representation. With the recent availability of inexpensive 2.5D depth sensors (e.g. Microsoft Kinect),…

Computer Vision and Pattern Recognition · Computer Science 2015-04-16 Zhirong Wu , Shuran Song , Aditya Khosla , Fisher Yu , Linguang Zhang , Xiaoou Tang , Jianxiong Xiao

Deep convolutional neural networks are powerful tools for learning visual representations from images. However, designing efficient deep architectures to analyse volumetric medical images remains challenging. This work investigates…

Computer Vision and Pattern Recognition · Computer Science 2017-07-10 Wenqi Li , Guotai Wang , Lucas Fidon , Sebastien Ourselin , M. Jorge Cardoso , Tom Vercauteren

Machine learning models for 3D molecular property prediction typically rely on atom-based representations, which may overlook subtle physical information. Electron density maps -- the direct output of X-ray crystallography and cryo-electron…

Machine Learning · Computer Science 2025-12-01 Patricia Suriana , Joshua A. Rackers , Ewa M. Nowara , Pedro O. Pinheiro , John M. Nicoloudis , Vishnu Sresht

In recent era prediction of enzyme class from an unknown protein is one of the challenging tasks in bioinformatics. Day to day the number of proteins is increases as result the prediction of enzyme class gives a new opportunity to…

Machine Learning · Computer Science 2019-01-21 Chhote Lal Prasad Gupta , Anand Bihari , Sudhakar Tripathi

Deep convolutional neural networks (ConvNets) of 3-dimensional kernels allow joint modeling of spatiotemporal features. These networks have improved performance of video and volumetric image analysis, but have been limited in size due to…

Computer Vision and Pattern Recognition · Computer Science 2017-06-13 David Budden , Alexander Matveev , Shibani Santurkar , Shraman Ray Chaudhuri , Nir Shavit

In the dynamic realm of deepfake detection, this work presents an innovative approach to validate video content. The methodology blends advanced 2-dimensional and 3-dimensional Convolutional Neural Networks. The 3D model is uniquely…

Computer Vision and Pattern Recognition · Computer Science 2023-10-26 Aagam Bakliwal , Amit D. Joshi

Over 30 papers have proposed to use convolutional neural network (CNN) for AD classification from anatomical MRI. However, the classification performance is difficult to compare across studies due to variations in components such as…

Deep Convolutional Neural Networks (CNNs) have been one of the most influential recent developments in computer vision, particularly for categorization. There is an increasing demand for explainable AI as these systems are deployed in the…

Computer Vision and Pattern Recognition · Computer Science 2018-11-21 Tian Xu , Jiayu Zhan , Oliver G. B. Garrod , Philip H. S. Torr , Song-Chun Zhu , Robin A. A. Ince , Philippe G. Schyns

Deep learning with a convolutional neural network (CNN) has been proved to be very effective in feature extraction and representation of images. For image classification problems, this work aim at finding which classifier is more…

Machine Learning · Computer Science 2015-06-09 Lei Zhang , David Zhang

Automated 3D CT diagnosis empowers clinicians to make timely, evidence-based decisions by enhancing diagnostic accuracy and workflow efficiency. While multimodal large language models (MLLMs) exhibit promising performance in visual-language…

Computer Vision and Pattern Recognition · Computer Science 2025-06-12 Yanzhao Shi , Xiaodan Zhang , Junzhong Ji , Haoning Jiang , Chengxin Zheng , Yinong Wang , Liangqiong Qu

Deep Neural Networks - especially Convolutional Neural Network (ConvNet) has become the state-of-the-art for image classification, pattern recognition and various computer vision tasks. ConvNet has a huge potential in medical domain for…

Computer Vision and Pattern Recognition · Computer Science 2020-09-11 Md Motiur Rahman Sagar , Martin Dyrba