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Graph neural networks (GNNs) have extended the success of deep neural networks (DNNs) to non-Euclidean graph data, achieving ground-breaking performance on various tasks such as node classification and graph property prediction.…

Machine Learning · Computer Science 2021-12-17 Tianfeng Liu , Yangrui Chen , Dan Li , Chuan Wu , Yibo Zhu , Jun He , Yanghua Peng , Hongzheng Chen , Hongzhi Chen , Chuanxiong Guo

We present a GPU-accelerated version of the real-space SPARC electronic structure code for performing hybrid functional calculations in generalized Kohn-Sham density functional theory. In particular, we develop a batch variant of the…

Computational Physics · Physics 2025-01-29 Xin Jing , Abhiraj Sharma , John E. Pask , Phanish Suryanarayana

Graph-based retrieval-augmented generation (RAG) enables large language models (LLMs) to incorporate structured knowledge via graph retrieval as contextual input, enhancing more accurate and context-aware reasoning. We observe that for…

Machine Learning · Computer Science 2025-05-20 Qiuyu Zhu , Liang Zhang , Qianxiong Xu , Cheng Long , Jie Zhang

Large language model (LLM) serving demands low latency and high throughput, but high load variability makes it challenging to achieve high GPU utilization. In this paper, we identify a synergetic but overlooked opportunity to co-serve…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-05 Yifan Qiao , Shu Anzai , Shan Yu , Haoran Ma , Shuo Yang , Yang Wang , Miryung Kim , Yongji Wu , Yang Zhou , Jiarong Xing , Joseph E. Gonzalez , Ion Stoica , Harry Xu

Modern databases typically makes use of the Log Structured Merge-Tree for organizing data in indexes, which is a kind of disk-based data structure. It was proposed to efficiently handle frequent update queries (also called update intensive…

Databases · Computer Science 2024-02-28 Supriya Mishra

Large Language Models (LLMs) demonstrate strong reasoning abilities but face limitations such as hallucinations and outdated knowledge. Knowledge Graph (KG)-based Retrieval-Augmented Generation (RAG) addresses these issues by grounding LLM…

Computation and Language · Computer Science 2025-03-04 Mufei Li , Siqi Miao , Pan Li

Training Large Language Models(LLMs) is one of the most compute-intensive tasks in high-performance computing. Predicting end-to-end training time for multi-billion parameter models distributed across hundreds of GPUs remains challenging…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-30 Biyao Zhang , Mingkai Zheng , Debargha Ganguly , Xuecen Zhang , Vikash Singh , Vipin Chaudhary , Zhao Zhang

Neural Architecture Search (NAS) automates network design, but conventional methods demand substantial computational resources. We propose a closed-loop pipeline leveraging large language models (LLMs) to iteratively generate, evaluate, and…

Machine Learning · Computer Science 2026-03-13 Xiaojie Gu , Dmitry Ignatov , Radu Timofte

Large Language Model (LLM) inference is increasingly constrained by GPU memory capacity rather than compute throughput, driven by growing model sizes and the linear growth of the key-value (KV) cache during autoregressive decoding. Existing…

Machine Learning · Computer Science 2026-02-03 Nikhil Gopal , Kostis Kaffes

High-performance learned image compression codecs require flexible probability models to fit latent representations. Gaussian Mixture Models (GMMs) were proposed to satisfy this demand, but suffer from a significant runtime performance…

Image and Video Processing · Electrical Eng. & Systems 2025-09-24 Shimon Murai , Fangzheng Lin , Jiro Katto

Log-structured merge (LSM) trees offer efficient ingestion by appending incoming data, and thus, are widely used as the storage layer of production NoSQL data stores. To enable competitive read performance, LSM-trees periodically…

Databases · Computer Science 2022-03-01 Subhadeep Sarkar , Dimitris Staratzis , Zichen Zhu , Manos Athanassoulis

In this paper, we propose StruM, a novel structured mixed-precision-based deep learning inference method, co-designed with its associated hardware accelerator (DPU), to address the escalating computational and memory demands of deep…

Hardware Architecture · Computer Science 2025-05-20 Michael Wu , Arnab Raha , Deepak A. Mathaikutty , Martin Langhammer , Engin Tunali , Daksha Sharma

Scientific applications produce vast amounts of data, posing grand challenges in the underlying data management and analytic tasks. Progressive compression is a promising way to address this problem, as it allows for on-demand data…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-02 Yanliang Li , Wenbo Li , Qian Gong , Qing Liu , Norbert Podhorszki , Scott Klasky , Xin Liang , Jieyang Chen

In this paper, we present a novel massively parallel algorithm for accelerating the decision tree building procedure on GPUs (Graphics Processing Units), which is a crucial step in Gradient Boosted Decision Tree (GBDT) and random forests…

Machine Learning · Statistics 2017-06-27 Huan Zhang , Si Si , Cho-Jui Hsieh

Sparse General Matrix Multiply (SpGEMM) is key for various High-Performance Computing (HPC) applications such as genomics and graph analytics. Using the semiring abstraction, many algorithms can be formulated as SpGEMM, allowing…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-23 Thomas McFarland , Julian Bellavita , Giulia Guidi

We propose a novel generic inverted index framework on the GPU (called GENIE), aiming to reduce the programming complexity of the GPU for parallel similarity search of different data types. Not every data type and similarity measure are…

A merge tree is a topological descriptor of a real-valued function. Merge trees are used in visualization and topological data analysis, either directly or as a means to another end: computing a 0-dimensional persistence diagram,…

Computational Geometry · Computer Science 2023-01-31 Arnur Nigmetov , Dmitriy Morozov

Knowledge graph completion (KGC) aims to predict missing triples in knowledge graphs (KGs) by leveraging existing triples and textual information. Recently, generative large language models (LLMs) have been increasingly employed for graph…

Artificial Intelligence · Computer Science 2025-11-11 Yongkang Xiao , Sinian Zhang , Yi Dai , Huixue Zhou , Jue Hou , Jie Ding , Rui Zhang

We improve on GenASM, a recent algorithm for genomic sequence alignment, by significantly reducing its memory footprint and bandwidth requirement. Our algorithmic improvements reduce the memory footprint by 24$\times$ and the number of…

Hardware Architecture · Computer Science 2022-03-30 Joël Lindegger , Damla Senol Cali , Mohammed Alser , Juan Gómez-Luna , Onur Mutlu

The new non-volatile memory technology relies on data recoverability to achieve the promise of byte-addressable persistence in computer applications. The durable transaction (e.g. logging) is one of the major persistency programming models…

Hardware Architecture · Computer Science 2023-01-12 Xinjian Long
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