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Because of the isotropic and disordered nature of liquids, the anisotropy hidden in intermolecular interactions are often neglected. Accordingly, the order parameter describing a simple liquid has so far been believed to be only density. In…

Soft Condensed Matter · Physics 2008-02-03 Hajime Tanaka

Machine-learning (ML) has become a key workhorse in molecular simulations. Building an ML model in this context, involves encoding the information of chemical environments using local atomic descriptors. In this work, we focus on the Smooth…

Soft Condensed Matter · Physics 2023-04-21 Edward Danquah Donkor , Alessandro Laio , Ali Hassanali

There are at least three fundamental states of matter, depending upon temperature and pressure: gas, liquid, and solid (crystal). These states are separated by first-order phase transitions between them. In both gas and liquid phases the…

Soft Condensed Matter · Physics 2013-07-03 Hajime Tanaka

We investigate the structural similarities between liquid water and 53 ices, including 20 knowncrystalline phases. We base such similarity comparison on the local environments that consist of atoms within a certain cutoff radius of a…

Computational Physics · Physics 2020-06-25 Bartomeu Monserrat , Jan Gerit Brandenburg , Edgar A. Engel , Bingqing Cheng

The presence of a second critical point in water has been a topic of intense investigation for the last few decades. The molecular origins underlying this phenomenon are typically rationalized in terms of the competition between local…

Soft Condensed Matter · Physics 2024-04-11 Edward Danquah Donkor , Adu Offei-Danso , Alex Rodriguez , Francesco Sciortino , Ali Hassanali

Reduced order models are computationally inexpensive approximations that capture the important dynamical characteristics of large, high-fidelity computer models of physical systems. This paper applies machine learning techniques to improve…

Machine Learning · Computer Science 2015-11-11 Azam Moosavi , Razvan Stefanescu , Adrian Sandu

Disordered systems like liquids, gels, glasses, or granular materials are not only ubiquitous in daily life and in industrial applications but they are also crucial for the mechanical stability of cells or the transport of chemical and…

Disordered Systems and Neural Networks · Physics 2019-04-30 Zhen Zhang , Walter Kob

Machine learning methods are becoming increasingly important for the development of materials science. In spite of this, the use of image analysis in the development of these systems is still recent and underexplored, especially in…

Data Analysis, Statistics and Probability · Physics 2022-01-17 Arthur A. B. Pessa , Rafael S. Zola , Matjaz Perc , Haroldo V. Ribeiro

We use machine learning methods on local structure to identify flow defects - or regions susceptible to rearrangement - in jammed and glassy systems. We apply this method successfully to two disparate systems: a two dimensional experimental…

The anomalous behavior of liquid water is widely associated with a liquid-liquid phase transition between high- and low-density states in the supercooled regime. At the microscopic level, tetrahedral hydrogen-bond networks govern these…

Soft Condensed Matter · Physics 2026-05-04 Kohei Yoshikawa , Kokoro Shikata , Kang Kim , Nobuyuki Matubayasi

We introduce a scheme based on machine learning and deep neural networks to model the environmental dependence of the electronic polarizability in insulating materials. Application to liquid water shows that training the network with a…

Chemical Physics · Physics 2020-06-24 Grace M. Sommers , Marcos F. Calegari Andrade , Linfeng Zhang , Han Wang , Roberto Car

We introduce a local order metric (LOM) that measures the degree of order in the neighborhood of an atomic or molecular site in a condensed medium. The LOM maximizes the overlap between the spatial distribution of sites belonging to that…

Computational Physics · Physics 2018-02-21 Fausto Martelli , Hsin-Yu Ko , Erdal C. Oguz , Roberto Car

Liquid crystals are known for their optical birefringence, a property that gives rise to intricate patterns and colors when viewed in a microscope between crossed polarisers. Resulting images are rich in geometric patterns and serve as…

Soft Condensed Matter · Physics 2024-10-24 J. Terroa , M. Tasinkevych , C. S. Dias

Identifying local structural motifs and packing patterns of molecular solids is a challenging task for both simulation and experiment. We demonstrate two novel approaches to characterize local environments in different polymorphs of…

Materials Science · Physics 2024-04-02 Daisuke Kuroshima , Michael Kilgour , Mark E. Tuckerman , Jutta Rogal

Machine learning algorithms have been available since the 1990s, but it is much more recently that they have come into use also in the physical sciences. While these algorithms have already proven to be useful in uncovering new properties…

Computational Physics · Physics 2020-05-13 Higor Y. D. Sigaki , Ervin K. Lenzi , Rafael S. Zola , Matjaz Perc , Haroldo V. Ribeiro

Complex crystal structures are composed of multiple local environments, and how this type of order emerges spontaneously during crystal growth has yet to be fully understood. We study crystal growth across various structures and along…

Soft Condensed Matter · Physics 2024-06-03 Maya M. Martirossyan , Matthew Spellings , Hillary Pan , Julia Dshemuchadse

Machine learning algorithms thrive on large data sets of good quality. Here we show that they can also excel in a typical research setting with little data of limited quality, through an interplay of insights coming from machine, and human…

Strongly Correlated Electrons · Physics 2025-07-18 Nicolas Sadoune , Ke Liu , Han Yan , Ludovic D. C. Jaubert , Nic Shannon , Lode Pollet

Using numerical simulations of a model disk system, we demonstrate that a machine learning generated order parameter can detect depinning transitions and different dynamic flow phases in systems driven far from equilibrium. We specifically…

Statistical Mechanics · Physics 2024-04-23 D. McDermott , C. J. O. Reichhardt , C. Reichhardt

A machine-learning strategy for investigating the stability of fluid flow problems is proposed herein. The goal is to provide a simple yet robust methodology to find a nonlinear mapping from the parametric space to an indicator representing…

Fluid Dynamics · Physics 2026-01-06 David J. Silvester

We have adapted a set of classification algorithms, also known as Machine Learning, to the identification of fluid and gel domains close to the main transition of dipalmitoyl-phosphatidylcholine (DPPC) bilayers. Using atomistic molecular…

Soft Condensed Matter · Physics 2023-07-19 Viven Walter , Céline Ruscher , Olivier Benzerara , Carlos M. Marques , Fabrice Thalmann
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