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The aim of this article is to introduce a reporting framework for reproducible, interactive research applied to Big Clinical Data, based on open source technologies. The framework is constituted by the following three axes: (i) data, (ii)…

Recently, much attention has been focused on the replicability of scientific results, causing scientists, statisticians, and journal editors to examine closely their methodologies and publishing criteria. Experimental particle physicists…

Data Analysis, Statistics and Probability · Physics 2021-05-07 Thomas R. Junk , Louis Lyons

Computer Science education has been evolving over the years to reflect applied realities. Until about a decade ago, theory of computation, algorithm design and system software dominated the curricula. Most courses were considered core and…

Computers and Society · Computer Science 2022-08-10 Sreekrishnan Venkateswaran

Reproducibility is an ideal that no researcher would dispute "in the abstract", but when aspirations meet the cold hard reality of the academic grind, reproducibility often "loses out". In this essay, I share some personal experiences…

Information Retrieval · Computer Science 2022-12-29 Jimmy Lin

Authorship of scientific articles has profoundly changed from early science until now. While once upon a time a paper was authored by a handful of authors, scientific collaborations are much more prominent on average nowadays. As authorship…

Digital Libraries · Computer Science 2022-09-16 Andrea Mannocci , Ornella Irrera , Paolo Manghi

The field of deep learning has witnessed significant breakthroughs, spanning various applications, and fundamentally transforming current software capabilities. However, alongside these advancements, there have been increasing concerns…

Machine Learning · Computer Science 2025-05-07 Nikita Ravi , Abhinav Goel , James C. Davis , George K. Thiruvathukal

There has been increasing concern within the machine learning community that we are in a reproducibility crisis. As many have begun to work on this problem, all work we are aware of treat the issue of reproducibility as an intrinsic binary…

Machine Learning · Statistics 2020-12-21 Edward Raff

Peer review is a cornerstone of modern scientific endeavor. However, there is growing consensus that several limitations of the current peer review system, from lack of incentives to reviewers to lack of transparency, risks to undermine its…

Digital Libraries · Computer Science 2020-08-21 Andrea Mambrini , Andrea Baronchelli , Michele Starnini , Daniele Marinazzo , Manlio De Domenico

Software is now a vital scientific instrument, providing the tools for data collection and analysis across disciplines from bioinformatics and computational physics, to the humanities. The software used in research is often home-grown and…

Software Engineering · Computer Science 2019-03-15 Mario Rosado de Souza , Robert Haines , Markel Vigo , Caroline Jay

Our analysis of recent AI4H publications reveals that, despite a trend toward utilizing open datasets and sharing modeling code, 74% of AI4H papers still rely on private datasets or do not share their code. This is especially concerning in…

Computers and Society · Computer Science 2026-03-05 John Wu , Zhenbang Wu , Jimeng Sun

Reproducibility should be a cornerstone of scientific research and is a growing concern among the scientific community and the public. Understanding how to design services and tools that support documentation, preservation and sharing is…

Human-Computer Interaction · Computer Science 2019-03-15 Sebastian S. Feger , Sünje Dallmeier-Tiessen , Albrecht Schmidt , Paweł W. Woźniak

Digital computational outputs are now ubiquitous in the research workflow and the way in which these data are stored and cataloged is becoming more standardized across fields of research. However, even with accessible data and code, the…

Digital Libraries · Computer Science 2025-08-19 Sabar Dasgupta , Paul Nuyujukian

Results of simulation studies evaluating the performance of statistical methods are often considered actionable and thus can have a major impact on the way empirical research is implemented. However, so far there is limited evidence about…

Reproducibility is one of the core dimensions that concur to deliver Trustworthy Artificial Intelligence. Broadly speaking, reproducibility can be defined as the possibility to reproduce the same or a similar experiment or method, thereby…

Artificial Intelligence · Computer Science 2023-02-27 Riccardo Albertoni , Sara Colantonio , Piotr Skrzypczyński , Jerzy Stefanowski

The broad sharing of research data is widely viewed as of critical importance for the speed, quality, accessibility, and integrity of science. Despite increasing efforts to encourage data sharing, both the quality of shared data, and the…

Digital Libraries · Computer Science 2022-08-30 William Dempsey , Ian Foster , Scott Fraser , Carl Kesselman

Science reproducibility is a cornerstone feature in scientific workflows. In most cases, this has been implemented as a way to exactly reproduce the computational steps taken to reach the final results. While these steps are often…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-21 Karan Vahi , Mats Rynge , George Papadimitriou , Duncan A. Brown , Rajiv Mayani , Rafael Ferreira da Silva , Ewa Deelman , Anirban Mandal , Eric Lyons , Michael Zink

This paper introduces reproducible research, and explains its importance, benefits and challenges. Some important tools for conducting reproducible research in Transportation Research are also introduced. Moreover, the source code for…

Digital Libraries · Computer Science 2021-05-17 Zuduo Zheng

The solution to science's replication crisis is a new ecosystem in which scientists sell what they learn from their research. In each pairwise transaction, the information seller makes (loses) money if he turns out to be correct…

Economics · Quantitative Finance 2016-09-13 Bruce Knuteson

Open-sourcing research publications is a key enabler for the reproducibility of studies and the collective scientific progress of a research community. As all fields of science develop more advanced algorithms, we become more dependent on…

Systems and Control · Electrical Eng. & Systems 2023-08-22 Siqi Zhou , Lukas Brunke , Allen Tao , Adam W. Hall , Federico Pizarro Bejarano , Jacopo Panerati , Angela P. Schoellig

Over the past decade, an explosion in the availability of education-related datasets has enabled new computational research in education. Much of this work has investigated digital traces of online learners in order to better understand and…

Computers and Society · Computer Science 2023-01-16 Nabeel Gillani , Rebecca Eynon