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Background: The huge quantity of data produced in Biomedical research needs sophisticated algorithmic methodologies for its storage, analysis, and processing. High Performance Computing (HPC) appears as a magic bullet in this challenge.…

Quantitative Methods · Quantitative Biology 2016-10-19 Gianni D'Angelo , Salvatore Rampone

The solution of linear systems of equations is a very frequent operation and thus important in many fields. The complexity using classical methods increases linearly with the size of equations. The HHL algorithm proposed by Harrow et al.…

Quantum Physics · Physics 2022-06-14 Fang Gao , Guojian Wu , Mingyu Yang , Wei Cui , Feng Shuang

We present a quantum algorithm for simulating complex many-body systems and finding their ground states, combining the use of tensor networks and density matrix renormalization group (DMRG) techniques. The algorithm is based on von…

Quantum Physics · Physics 2026-03-06 Younes Javanmard

The partition function and free energy of a quantum many-body system determine its physical properties in thermal equilibrium. Here we study the computational complexity of approximating these quantities for $n$-qubit local Hamiltonians.…

Quantum Physics · Physics 2023-09-22 Sergey Bravyi , Anirban Chowdhury , David Gosset , Pawel Wocjan

We propose a new approximate factorization for solving linear systems with symmetric positive definite sparse matrices. In a nutshell the algorithm is to apply hierarchically block Gaussian elimination and additionally compress the fill-in.…

Numerical Analysis · Mathematics 2018-05-08 Daria A. Sushnikova , Ivan V. Oseledets

While modern general-purpose computing systems have ample amounts of memory, it is still the case that embedded computer systems, such as in a refrigerator, are memory limited; hence, such embedded systems motivate the need for strictly…

Data Structures and Algorithms · Computer Science 2026-03-09 Ofek Gila , Michael T. Goodrich , Vinesh Sridhar

Single individual haplotyping is an NP-hard problem that emerges when attempting to reconstruct an organism's inherited genetic variations using data typically generated by high-throughput DNA sequencing platforms. Genomes of diploid…

Machine Learning · Computer Science 2019-09-04 Somsubhra Barik , Haris Vikalo

A moment body is a linear projection of the spectraplex, the convex set of trace-one positive semidefinite matrices. Determining whether a given point lies within a given moment body is a problem with numerous applications in quantum state…

Optimization and Control · Mathematics 2025-07-04 Didier Henrion

The symmetric heavy-light ansatz is a method for finding the ground state of any dilute unpolarized system of attractive two-component fermions. Operationally it can be viewed as a generalization of the Kohn-Sham equations in density…

Superconductivity · Physics 2010-02-11 Dean Lee

We present two new algebraic multilevel hierarchical matrix algorithms to perform fast matrix-vector product (MVP) for $N$-body problems in $d$ dimensions, namely efficient $\mathcal{H}^2_{*}$ (fully nested algorithm, i.e., $\mathcal{H}^2$…

Numerical Analysis · Mathematics 2026-04-13 Ritesh Khan , Sivaram Ambikasaran

We propose and study an algorithm for computing a nearest passive system to a given non-passive linear time-invariant system (with much freedom in the choice of the metric defining `nearest', which may be restricted to structured…

Numerical Analysis · Mathematics 2021-03-04 Antonio Fazzi , Nicola Guglielmi , Christian Lubich

We consider anti-unification for simply typed lambda terms in associative, commutative, and associative-commutative theories and develop a sound and complete algorithm which takes two lambda terms and computes their generalizations in the…

Logic in Computer Science · Computer Science 2022-08-02 David M. Cerna , Temur Kutsia

We present an exact spin-elimination technique that reduces the dimensionality of both quadratic and k-local Ising Hamiltonians while preserving their original ground-state configurations. By systematically replacing each removed spin with…

Quantum Physics · Physics 2025-05-13 Natalia G. Berloff

Accurate computation of multiple eigenvalues of quantum Hamiltonians is essential in quantum chemistry, materials science, and molecular spectroscopy. Estimating excited-state energies is challenging for classical algorithms due to…

Quantum Physics · Physics 2026-05-22 Grzegorz Rajchel-Mieldzioć , Szymon Pliś , Emil Zak

In this paper we describe a parallel Gaussian elimination algorithm for matrices with entries in a finite field. Unlike previous approaches, our algorithm subdivides a very large input matrix into smaller submatrices by subdividing both…

Rings and Algebras · Mathematics 2018-06-13 Stephen Linton , Gabriele Nebe , Alice Niemeyer , Richard Parker , Jon Thackray

Stochastic master equations are often used to describe conditional spin squeezing of atomic ensemble, but are limited so far to the systems with few atoms due to the exponentially increased Hilbert space. In this article, we present an…

Quantum Physics · Physics 2024-02-06 ZhiQing Zhang , Yuan Zhang , HaiZhong Guo , ChongXin Shan , Gang Chen , Klaus Mølmer

We demonstrate a method to optimize the combination of distinct components in a paragraph retrieval system. Our system makes use of several indices, query generators and filters, each of them potentially contributing to the quality of the…

Information Retrieval · Computer Science 2014-08-12 Boris Iolis , Gianluca Bontempi

Quasi-degenerate eigenvalue problems are central to quantum chemistry and condensed-matter physics, where low-energy spectra often form manifolds of nearly degenerate states that determine physical properties. Standard quantum algorithms,…

Quantum Physics · Physics 2026-03-24 Chun-Tse Li , Tzen Ong , Chih-Yun Lin , Yu-Cheng Chen , Hsin Lin , Min-Hsiu Hsieh

We propose an unsupervised hashing method which aims to produce binary codes that preserve the ranking induced by a real-valued representation. Such compact hash codes enable the complete elimination of real-valued feature storage and allow…

Computer Vision and Pattern Recognition · Computer Science 2019-03-06 Svebor Karaman , Xudong Lin , Xuefeng Hu , Shih-Fu Chang

An exact, number-conserving solution to the generalized, orbit-dependent pairing problem is derived by introducing an infinite-dimensional algebra. A method for obtaining eigenvalues and eigenvectors of the corresponding Hamiltonian is also…

Nuclear Theory · Physics 2009-10-30 Feng Pan , J. P. Draayer , W. E. Ormand