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We here introduce a novel scheme for generating smoothly-varying infill graded microstructural (IGM) configurations from a given menu of generating cells. The scheme was originally proposed for essentially improving the variety of…

Computational Engineering, Finance, and Science · Computer Science 2020-05-20 Dingchuan Xue , Yichao Zhu , Xu Guo

At elevated temperature environments, elastic structures experience a change of the stress-free state of the body that can strongly influence the optimal topology of the structure. This work presents level-set based topology optimization of…

Computational Engineering, Finance, and Science · Computer Science 2020-02-19 Hayoung Chung , Oded Amir , H. Alicia Kim

Particle based optimization algorithms have recently been developed as sampling methods that iteratively update a set of particles to approximate a target distribution. In particular Stein variational gradient descent has gained attention…

Machine Learning · Computer Science 2021-03-19 Francesco D'Angelo , Vincent Fortuin

Mapper, a topological algorithm, is frequently used as an exploratory tool to build a graphical representation of data. This representation can help to gain a better understanding of the intrinsic shape of high-dimensional genomic data and…

Genomics · Quantitative Biology 2023-07-19 Erik J. Amézquita , Farzana Nasrin , Kathleen M. Storey , Masato Yoshizawa

We demonstrate a new algorithm for finding protein conformations that minimize a non-bonded energy function. The new algorithm, called the difference map, seeks to find an atomic configuration that is simultaneously in two constraint…

Biomolecules · Quantitative Biology 2007-06-13 Ivan C. Rankenburg , Veit Elser

Adaptive quantum design identifies the best broken-symmetry configurations of atoms and molecules that enable a desired target function response. In this work, numerical optimization is used to design atomic clusters with specified…

Strongly Correlated Electrons · Physics 2009-11-10 Jason Thalken , Yu Chen , A. F. J. Levi , Stephan Haas

Computing atomic-scale properties of chemically disordered materials requires an efficient exploration of their vast configuration space. Traditional approaches such as Monte Carlo or Special Quasirandom Structures either entail sampling an…

Materials Science · Physics 2026-03-17 Maciej J. Karcz , Luca Messina , Eiji Kawasaki , Emeric Bourasseau

Topology optimization (TO) is a family of computational methods that derive near-optimal geometries from formal problem descriptions. Despite their success, established TO methods are limited to generating single solutions, restricting the…

Machine Learning · Computer Science 2025-06-18 Andreas Radler , Eric Volkmann , Johannes Brandstetter , Arturs Berzins

We present an information-based total-energy optimization method to produce nearly defect-free structural models of amorphous silicon. Using geometrical, structural and topological information from disordered tetrahedral networks, we have…

Disordered Systems and Neural Networks · Physics 2019-01-28 Dil K. Limbu , Raymond Atta-Fynn , Parthapratim Biswas

Multiscale topology optimization is crucial for designing porous infill structures with high stiffness-to-weight ratios and excellent energy absorption. Although gradient-based methods provide a rigorous framework, they are computationally…

Optimization and Control · Mathematics 2025-10-13 Shuzhi Xu , Yifan Guo , Hiroki Kawabe , Kentaro Yaji

Several types of numerical and combinatorial optimization algorithms have been used as useful tools to minimize functional forms. Generally, when those forms are non-linear or occur in problems without a specific optimization method,…

Chemical Physics · Physics 2007-05-23 Luiz Fernando Roncaratti , Ricardo Gargano , Geraldo Magela e Silva

There is evidence that the self-assembly of complex molecular systems often proceeds hierarchically, by first building subunits that later assemble in larger entities, in a process that can repeat multiple times. Yet, our understanding of…

Soft Condensed Matter · Physics 2025-09-15 Miranda Holmes-Cerfon , Matthieu Wyart

Structural optimization (topology, shapes, sizing) is an important tool for facilitating the emergence of new concepts in structural design. Normally, topology optimization is carried out at the early stage of design and then shape and…

Optimization and Control · Mathematics 2021-03-16 Ghislain Raze , Joseph Morlier

Preparing low energy states is a central challenge in quantum computing and quantum complexity theory. Several known approaches to prepare low energy states often get stuck in suboptimal states, such as high energy eigenstates (or low…

Quantum Physics · Physics 2026-03-17 Anurag Anshu

The dynamics of amorphous silicon at low temperatures can be characterized by a sequence of discrete activated events, through which the topological network is locally reorganized. Using the activation-relaxation technique, we create more…

Condensed Matter · Physics 2009-10-31 G. T. Barkema , Normand Mousseau

This study proposes a methodology to utilize machine learning (ML) for topology optimization of periodic lattice structures. In particular, we investigate data representation of lattice structures used as input data for ML models to improve…

Optimization and Control · Mathematics 2024-11-22 Tomoya Matsuoka , Makoto Ohsaki , Kazuki Hayashi

In this paper we define a discrete dynamical system that governs the evolution of a population of agents. From the dynamical system, a variant of Differential Evolution is derived. It is then demonstrated that, under some assumptions on the…

Computational Engineering, Finance, and Science · Computer Science 2016-11-17 Massimiliano Vasile , Edmondo Minisci , Marco Locatelli

We discuss a novel genetic algorithm that can be used to find global minima on the potential energy surface of disordered ceramics and alloys using a real-space symmetry adapted crossover. Due to a high number of symmetrically equivalent…

Materials Science · Physics 2011-05-31 Chris E. Mohn , Svein Stølen , Walter Kob

Topology design optimization offers tremendous opportunity in design and manufacturing freedoms by designing and producing a part from the ground-up without a meaningful initial design as required by conventional shape design optimization…

Machine Learning · Statistics 2019-01-10 Sharad Rawat , M. H. Herman Shen

This paper defines the basis of a new hierarchical framework for segmentation algorithms based on energy minimization schemes. This new framework is based on two formal tools. First, a combinatorial pyramid encode efficiently a hierarchy of…

Computer Vision and Pattern Recognition · Computer Science 2009-06-16 Martin Braure De Calignon , Luc Brun , Jacques-Olivier Lachaud