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Estimating similarity between vertices is a fundamental issue in network analysis across various domains, such as social networks and biological networks. Methods based on common neighbors and structural contexts have received much…

Social and Information Networks · Computer Science 2015-04-14 Jing Zhang , Jie Tang , Cong Ma , Hanghang Tong , Yu Jing , Juanzi Li

We introduce an unsupervised graph embedding that trades off local node similarity and connectivity, and global structure. The embedding is based on a generalized graph Laplacian, whose eigenvectors compactly capture both network structure…

Machine Learning · Computer Science 2020-10-01 Shay Deutsch , Stefano Soatto

Quantifying the similarity between two networks is critical in many applications. A number of algorithms have been proposed to compute graph similarity, mainly based on the properties of nodes and edges. Interestingly, most of these…

Neurons and Cognition · Quantitative Biology 2017-09-22 Ahmad Mheich , Mahmoud Hassan , Mohamad Khalil , Vincent Gripon , Olivier Dufor , Fabrice Wendling

Subgraph queries also known as subgraph isomorphism search is a fundamental problem in querying graph-like structured data. It consists to enumerate the subgraphs of a data graph that match a query graph. This problem arises in many…

Databases · Computer Science 2018-07-11 C. Nabti , T. Mecharnia , S. E. Boukhetta , H. Seba , K. Amrouche

Constructing a similarity graph from a set $X$ of data points in $\mathbb{R}^d$ is the first step of many modern clustering algorithms. However, typical constructions of a similarity graph have high time complexity, and a quadratic space…

Data Structures and Algorithms · Computer Science 2023-10-24 Peter Macgregor , He Sun

Spectral methods which represent data points by eigenvectors of kernel matrices or graph Laplacian matrices have been a primary tool in unsupervised data analysis. In many application scenarios, parametrizing the spectral embedding by a…

Machine Learning · Statistics 2022-06-15 Ziyu Chen , Yingzhou Li , Xiuyuan Cheng

Most state-of-the-art graph kernels only take local graph properties into account, i.e., the kernel is computed with regard to properties of the neighborhood of vertices or other small substructures. On the other hand, kernels that do take…

Machine Learning · Computer Science 2017-09-25 Christopher Morris , Kristian Kersting , Petra Mutzel

Mapping human genetic variation is fundamentally interesting in fields such as anthropology and forensic inference. At the same time patterns of genetic diversity confound efforts to determine the genetic basis of complex disease. Due to…

Applications · Statistics 2010-07-13 Ann B. Lee , Diana Luca , Kathryn Roeder

When performing classification tasks, raw high dimensional features often contain redundant information, and lead to increased computational complexity and overfitting. In this paper, we assume the data samples lie on a single underlying…

Image and Video Processing · Electrical Eng. & Systems 2020-08-11 Bowen Jiang , Maohao Shen

Understanding representational similarity between neural recordings and computational models is essential for neuroscience, yet remains challenging to measure reliably due to the constraints on the number of neurons that can be recorded…

Disordered Systems and Neural Networks · Physics 2025-10-27 Hyunmo Kang , Abdulkadir Canatar , SueYeon Chung

Graph similarity computation aims to predict a similarity score between one pair of graphs to facilitate downstream applications, such as finding the most similar chemical compounds similar to a query compound or Fewshot 3D Action…

Machine Learning · Computer Science 2021-01-06 Haoyan Xu , Ziheng Duan , Jie Feng , Runjian Chen , Qianru Zhang , Zhongbin Xu , Yueyang Wang

Dynamic networks are ubiquitous for modelling sequential graph-structured data, e.g., brain connectome, population flows and messages exchanges. In this work, we consider dynamic networks that are temporal sequences of graph snapshots, and…

Machine Learning · Statistics 2022-03-30 Deborah Sulem , Henry Kenlay , Mihai Cucuringu , Xiaowen Dong

Embedding a web-scale information network into a low-dimensional vector space facilitates tasks such as link prediction, classification, and visualization. Past research has addressed the problem of extracting such embeddings by adopting…

Social and Information Networks · Computer Science 2018-03-14 Anton Tsitsulin , Davide Mottin , Panagiotis Karras , Emmanuel Müller

The existing research on spectral algorithms, applied within a Reproducing Kernel Hilbert Space (RKHS), has primarily focused on general kernel functions, often neglecting the inherent structure of the input feature space. Our paper…

Machine Learning · Statistics 2024-03-08 Weichun Xia , Lei Shi

Manifold structure learning is often used to exploit geometric information among data in semi-supervised feature learning algorithms. In this paper, we find that local discriminative information is also of importance for semi-supervised…

Machine Learning · Computer Science 2016-07-12 Sen Wang , Feiping Nie , Xiaojun Chang , Xue Li , Quan Z. Sheng , Lina Yao

This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli

In image set classification, a considerable advance has been made by modeling the original image sets by second order statistics or linear subspace, which typically lie on the Riemannian manifold. Specifically, they are Symmetric Positive…

Computer Vision and Pattern Recognition · Computer Science 2018-05-31 Rui Wang , Xiao-Jun Wu , Kai-Xuan Chen , Josef Kittler

In this paper we revisit the kernel density estimation problem: given a kernel $K(x, y)$ and a dataset of $n$ points in high dimensional Euclidean space, prepare a data structure that can quickly output, given a query $q$, a…

Data Structures and Algorithms · Computer Science 2020-11-16 Moses Charikar , Michael Kapralov , Navid Nouri , Paris Siminelakis

Anomaly detection based on one-class classification algorithms is broadly used in many applied domains like image processing (e.g. detection of whether a patient is "cancerous" or "healthy" from mammography image), network intrusion…

Machine Learning · Statistics 2017-07-14 Evgeny Burnaev , Pavel Erofeev , Dmitry Smolyakov

Finding the graphs that are most similar to a query graph in a large database is a common task with various applications. A widely-used similarity measure is the graph edit distance, which provides an intuitive notion of similarity and…

Databases · Computer Science 2021-10-05 Franka Bause , David B. Blumenthal , Erich Schubert , Nils M. Kriege
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