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Understanding how the brain functions is one of the biggest challenges of our time. The analysis of experimentally recorded neural firing patterns (spike trains) plays a crucial role in addressing this problem. Here, the PySpike library is…

Data Analysis, Statistics and Probability · Physics 2016-07-12 Mario Mulansky , Thomas Kreuz

We initiate an open-source library for the efficient analysis of temporal graphs. We consider one of the standard models of dynamic networks in which each edge has a discrete timestamp and transition time. Recently there has been a massive…

Data Structures and Algorithms · Computer Science 2025-08-04 Lutz Oettershagen , Petra Mutzel

Generation and analysis of time-series data is relevant to many quantitative fields ranging from economics to fluid mechanics. In the physical sciences, structures such as metastable and coherent sets, slow relaxation processes, collective…

A large amount of data is produced every second from modern information systems such as mobile devices, the world wide web, Internet of Things, social media, etc. Analysis and mining of this massive data requires a lot of advanced tools and…

Machine Learning · Computer Science 2020-01-13 Rising Odegua , Festus Ikpotokin

Timed model checking, the method to formally verify real-time systems, is attracting increasing attention from both the model checking community and the real-time community. Explicit-time description methods verify real-time systems using…

Logic in Computer Science · Computer Science 2009-12-15 Hao Wang , Wendy MacCaull

Deep reinforcement learning has been one of the fastest growing fields of machine learning over the past years and numerous libraries have been open sourced to support research. However, most codebases have a steep learning curve or limited…

Machine Learning · Computer Science 2021-05-20 Fabio Pardo

Efficient code writing is both a critical and challenging task, especially with the growing demand for computationally intensive algorithms in statistical and machine-learning applications. Despite the availability of significant…

Mathematical Software · Computer Science 2025-01-28 Jonathan Berrisch

This is the User Manual of the LASPATED library. This library is available on GitHub (at https://github.com/vguigues/LASPATED)) and provides a set of tools to analyze spatiotemporal data. A video tutorial for this library is available on…

We introduce giotto-tda, a Python library that integrates high-performance topological data analysis with machine learning via a scikit-learn-compatible API and state-of-the-art C++ implementations. The library's ability to handle various…

The Statistical Toolkit is an open source system specialized in the statistical comparison of distributions. It addresses requirements common to different experimental domains, such as simulation validation (e.g. comparison of experimental…

Computational Physics · Physics 2015-06-11 M Batic , A. M. Paganoni , A. Pfeiffer , M. G. Pia , A. Ribon

Python is a particularly appealing language to carry out data analysis, owing in part to its user-friendly character as well as its access to well maintained and powerful libraries like NumPy and SciPy. Still, for the purpose of analyzing…

High Energy Physics - Lattice · Physics 2024-02-01 Luis Altenkort , David Anthony Clarke , Jishnu Goswami , Hauke Sandmeyer

This paper proposes a non-intrusive, declarative, dynamic and transparent system called `HiQ` to track Python program runtime information without compromising on the run-time system performance and losing insight. HiQ can be used for…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-27 Fuheng Wu , Ivan Davchev , Jun Qian

River is a machine learning library for dynamic data streams and continual learning. It provides multiple state-of-the-art learning methods, data generators/transformers, performance metrics and evaluators for different stream learning…

We describe a novel, interdisciplinary, computational methods course that uses Python and associated numerical and visualization libraries to enable students to implement simulations for a number of different course modules. Problems in…

Chaotic Dynamics · Physics 2007-05-23 Christopher R. Myers , James. P. Sethna

While current time series research focuses on developing new models, crucial questions of selecting an optimal approach for training such models are underexplored. Tsururu, a Python library introduced in this paper, bridges SoTA research…

Machine Learning · Computer Science 2025-09-22 Alina Kostromina , Kseniia Kuvshinova , Aleksandr Yugay , Andrey Savchenko , Dmitry Simakov

We introduce the Control Toolbox (CT), an open-source C++ library for efficient modeling, control, estimation, trajectory optimization and Model Predictive Control. The CT is applicable to a broad class of dynamic systems but features…

Robotics · Computer Science 2018-07-04 Markus Giftthaler , Michael Neunert , Markus Stäuble , Jonas Buchli

This paper presents a systematic review of Python packages with a focus on time series analysis. The objective is to provide (1) an overview of the different time series analysis tasks and preprocessing methods implemented, and (2) an…

Mathematical Software · Computer Science 2021-06-23 Julien Siebert , Janek Groß , Christof Schroth

PyPOTS is an open-source Python library dedicated to data mining and analysis on multivariate partially-observed time series with missing values. Particularly, it provides easy access to diverse algorithms categorized into five tasks:…

Machine Learning · Computer Science 2025-07-10 Wenjie Du , Yiyuan Yang , Linglong Qian , Jun Wang , Qingsong Wen

libact is a Python package designed to make active learning easier for general users. The package not only implements several popular active learning strategies, but also features the active-learning-by-learning meta-algorithm that assists…

Machine Learning · Computer Science 2017-10-03 Yao-Yuan Yang , Shao-Chuan Lee , Yu-An Chung , Tung-En Wu , Si-An Chen , Hsuan-Tien Lin

Efficient code retrieval is critical for developer productivity, yet existing benchmarks largely focus on Python and rarely stress-test robustness beyond superficial lexical cues. To address the gap, we introduce an automated pipeline for…

Software Engineering · Computer Science 2026-03-06 Kaicheng Wang , Liyan Huang , Weike Fang , Weihang Wang
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