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A unified model is constructed to study the recently observed DNA entropic elasticity, cooperative extensibility, and supercoiling property. With the introduction of a new structural parameter (the folding angle $\phi$), bending…
It is shown that the one-dimensional nonlinear Schr\"odinger equation with a dissipative periodic potential, nonlinear losses and linear pump allow for the existence of stable nonlinear Bloch states which are attractors. The model describes…
We provide a rigorous justification of various kinetic regimes exhibited by the nonlinear Schr\"{o}dinger equation with an additive stochastic forcing and a viscous dissipation. The importance of such damped-driven models stems from their…
Dynamics of a chain of interacting parity-time invariant nonlinear dimers is investigated. A dimer is built as a pair of coupled elements with equal gain and loss. A relation between stationary soliton solutions of the model and solitons of…
Within a nonperturbative dynamical two-body approach - based on coupled equations of motion for the one-body density matrix and the two-body correlation function - we study the distribution of occupation numbers in a correlated system close…
For a one-dimensional linear lattice, earlier work has shown how to systematically construct a slowly-decaying linear potential bearing a localized eigenmode embedded in the continuous spectrum. Here, we extend this idea in two directions:…
The identification of a nonlinear dynamic model is an open topic in control theory, especially from sparse input-output measurements. A fundamental challenge of this problem is that very few to zero prior knowledge is available on both the…
We investigate DNA breathing dynamics by suggesting and examining several different Brownian functionals associated with bubble lifetime and reactivity. Bubble dynamics is described as an overdamped random walk in the number of broken base…
The steady state motion of cylindrical droplets under the action of external body force is investigated both theoretically and via lattice Boltzmann simulation. As long as the shape-invariance of droplet is maintained, the droplet's…
We propose a dynamical model for non-specific DNA-protein interaction, which is based on the 'bead-spring' model previously developed by other groups, and investigate its properties using Brownian Dynamics simulations. We show that the…
Electron-positron clusters are studied using a quantum hydrodynamic model that includes Coulomb and exchange interactions. A variational Lagrangian method is used to determine their stationary and dynamical properties. The cluster static…
This paper proposes a one-dimensional lattice model with long-range interactions which, in the continuum, keeps its nonlocal behaviour. In fact, the long-time evolution of the localized waves is governed by an asymptotic equation of the…
We introduce a dissipative particle dynamics scheme for the dynamics of non-ideal fluids. Given a free-energy density that determines the thermodynamics of the system, we derive consistent conservative forces. The use of these effective,…
We consider a modulated discrete nonlinear Schr\"odinger (DNLS) model with alternating on-site potential, having a linear spectrum with two branches separated by a 'forbidden' gap. Nonlinear localized time-periodic solutions with…
We investigate a higher order nonlinear Schr\"odinger equation with linear damping and weak viscosity, recently proposed as a model for deep water waves exhibiting frequency downshifting. Through analysis and numerical simulations, we…
In the present work we study the nucleation of Dispersive shock waves (DSW) in the {defocusing}, discrete nonlinear Schr{\"o}dinger equation (DNLS), a model of wide relevance to nonlinear optics and atomic condensates. Here, we study the…
We study spreading dynamics of nematic liquid crystal droplets within the framework of the long-wave approximation. A fourth order nonlinear parabolic partial differential equation governing the free surface evolution is derived. The…
A study of the dynamics of a tunneling particle in a driven bistable potential which is moderately-to-strongly coupled to a bath is presented. Upon restricting the system dynamics to the Hilbert space spanned by the M lowest energy…
This work investigates the out-of-equilibrium dynamics of dipole and higher-moment conserving systems with long-range interactions, drawing inspiration from trapped ion experiments in strongly tilted potentials. We introduce a hierarchical…
We consider the discrete p-Schr\"odinger (DpS) equation, which approximates small amplitude oscillations in chains of oscillators with fully-nonlinear nearest-neighbors interactions of order alpha = p-1 >1. Using a mapping approach, we…