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Large tree structures are ubiquitous and real-world relational datasets often have information associated with nodes (e.g., labels or other attributes) and edges (e.g., weights or distances) that need to be communicated to the viewers. Yet,…

Computational Geometry · Computer Science 2023-05-18 Kathryn Gray , Mingwei Li , Reyan Ahmed , Md. Khaledur Rahman , Ariful Azad , Stephen Kobourov , Katy Börner

The purpose of this paper is to assess the statistical characterization of weighted networks in terms of the generalization of the relevant parameters, namely average path length, degree distribution and clustering coefficient. Although the…

Physics and Society · Physics 2007-05-23 Antoniou Ioannis , Tsompa Eleni

Network node embedding is an active research subfield of complex network analysis. This paper contributes a novel approach to learning network node embeddings and direct node classification using a node ranking scheme coupled with an…

Machine Learning · Computer Science 2021-09-14 Blaž Škrlj , Jan Kralj , Janez Konc , Marko Robnik-Šikonja , Nada Lavrač

Designing well-connected graphs is a fundamental problem that frequently arises in various contexts across science and engineering. The weighted number of spanning trees, as a connectivity measure, emerges in numerous problems and plays a…

Data Structures and Algorithms · Computer Science 2016-04-13 Kasra Khosoussi , Gaurav S. Sukhatme , Shoudong Huang , Gamini Dissanayake

We extend the previously observed scaling equation connecting the internode distances and nodes' degrees onto the case of weighted networks. We show that the scaling takes a similar form in the empirical data obtained from networks…

Physics and Society · Physics 2010-08-25 Julian Sienkiewicz , Janusz A. Holyst

We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Ming-Yang Kao , Tak-Wah Lam , Wing-Kin Sung , Hing-Fung Ting

We investigate the searchability of complex systems in terms of their interconnectedness. Associating searchability with the number and size of branch points along the paths between the nodes, we find that scale-free networks are relatively…

Disordered Systems and Neural Networks · Physics 2007-05-23 M. Rosvall , A. Gronlund , P. Minnhagen , K. Sneppen

In this paper, we study a regular rooted coloured tree with random labels assigned to its edges, where the distribution of the label assigned to an edge depends on the colours of its endpoints. We obtain some new results relevant to this…

Probability · Mathematics 2011-11-10 Mikhail Menshikov , Dimitri Petritis , Stanislav Volkov

A connected graph has tree-depth at most $k$ if it is a subgraph of the closure of a rooted tree whose height is at most $k$. We give an algorithm which for a given $n$-vertex graph $G$, in time $\mathcal{O}(1.9602^n)$ computes the…

Data Structures and Algorithms · Computer Science 2013-06-18 Fedor V. Fomin , Archontia C. Giannopoulou , Michał Pilipczuk

The concept of node walk in graphs and complex networks has been addressed, consisting of one or more nodes that move into adjacent nodes, henceforth incorporating the respective connections. This type of dynamics is then applied to subsume…

Physics and Society · Physics 2024-06-07 Alexandre Benatti , Luciano da F. Costa

We consider the counting problem of the number of \textit{leaf-labeled increasing trees}, where internal nodes may have an arbitrary number of descendants. The set of all such trees is a discrete representation of the genealogies obtained…

Populations and Evolution · Quantitative Biology 2022-11-08 Johannes Wirtz

In the training of large deep neural networks, there is a need for vast amounts of training data. To meet this need, data is collected from multiple domains, such as Wikipedia and GitHub. These domains are heterogeneous in both data quality…

Machine Learning · Computer Science 2025-11-11 Mahdi Salmani , Pratik Worah , Meisam Razaviyayn , Vahab Mirrokni

We study a model of random $\mathcal{R}$-enriched trees that is based on weights on the $\mathcal{R}$-structures and allows for a unified treatment of a large family of random discrete structures. We establish distributional limits…

Probability · Mathematics 2018-12-12 Benedikt Stufler

In this article, we explicitly derive the limiting degree distribution of the shortest path tree from a single source on various random network models with edge weights. We determine the asymptotics of the degree distribution for large…

Probability · Mathematics 2016-08-11 Shankar Bhamidi , Jesse Goodman , Remco van der Hofstad , Júlia Komjáthy

We study the extreme local structure of plane binary trees through the distribution of leaves at maximum depth. We first address two basic questions: (i) the asymptotic probability that exactly two leaves occur at the deepest level, and…

Combinatorics · Mathematics 2026-05-14 Olivier Bodini , Antoine Genitrini , Khaydar Nurligareev

The average node-to-node distance of scale-free graphs depends logarithmically on N, the number of nodes, while the probability distribution function (pdf) of the distances may take various forms. Here we analyze these by considering…

Statistical Mechanics · Physics 2009-11-07 Gabor Szabo , Mikko Alava , Janos Kertesz

This extended abstract is dedicated to the analysis of the height of non-plane unlabelled rooted binary trees. The height of such a tree chosen uniformly among those of size $n$ is proved to have a limiting theta distribution, both in a…

Combinatorics · Mathematics 2008-07-16 Nicolas Broutin , Philippe Flajolet

The $\lambda$-biased random walk on a binary tree of depth $n$ is the continuous-time Markov chain that has unit mean holding times and, when at a vertex other than the root or a leaf of the tree in question, has a probability of jumping to…

Probability · Mathematics 2025-03-05 David A. Croydon

In this paper, we study the factors that contribute to the effect of oversmoothing in deep Graph Neural Networks (GNNs). Specifically, our analysis is based on a new metric (Mean Average Squared Distance - $MASED$) to quantify the extent of…

Machine Learning · Computer Science 2025-10-08 Dimitrios Kelesis , Dimitris Fotakis , Georgios Paliouras

Rooted phylogenetic networks allow biologists to represent evolutionary relationships between present-day species by revealing ancestral speciation and hybridization events. A convenient and well-studied class of such networks are…

Populations and Evolution · Quantitative Biology 2026-02-02 Qiang Zhang , Mike Steel
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