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Given a graph with positive and negative edge labels, the correlation clustering problem aims to cluster the nodes so to minimize the total number of between-cluster positive and within-cluster negative edges. This problem has many…

Data Structures and Algorithms · Computer Science 2024-06-17 Mina Dalirrooyfard , Konstantin Makarychev , Slobodan Mitrović

Agglomerative hierarchical clustering (AHC) requires only the similarity between objects to be known. This is attractive when clustering signals of varying length, such as speech, which are not readily represented in fixed-dimensional…

Machine Learning · Computer Science 2018-10-31 Lerato Lerato , Thomas Niesler

Spatial search is the problem of finding a marked vertex in a graph. A continuous-time quantum walk in the single-excitation subspace of an $n$ spin system solves the problem of spatial search by finding the marked vertex in $O(\sqrt{n})$…

Quantum Physics · Physics 2024-10-10 Dylan Lewis , Leonardo Banchi , Sougato Bose

Social networks are often modeled using signed graphs, where vertices correspond to users and edges have a sign that indicates whether an interaction between users was positive or negative. The arising signed graphs typically contain a…

Data Structures and Algorithms · Computer Science 2022-06-29 Stefan Neumann , Pan Peng

Clustering graphs based on a comparison of the number of links within clusters and the expected value of this quantity in a random graph has gained a lot of attention and popularity in the last decade. Recently, Aldecoa and Marin proposed a…

Data Structures and Algorithms · Computer Science 2013-10-23 Tobias Fleck , Andrea Kappes , Dorothea Wagner

Time series clustering poses a significant challenge with diverse applications across domains. A prominent drawback of existing solutions lies in their limited interpretability, often confined to presenting users with centroids. In…

Machine Learning · Computer Science 2025-02-19 Paul Boniol , Donato Tiano , Angela Bonifati , Themis Palpanas

Clustering is a fundamental problem in unsupervised machine learning with many applications in data analysis. Popular clustering algorithms such as Lloyd's algorithm and $k$-means++ can take $\Omega(ndk)$ time when clustering $n$ points in…

Machine Learning · Computer Science 2023-10-26 Moses Charikar , Monika Henzinger , Lunjia Hu , Maxmilian Vötsch , Erik Waingarten

Dense subgraphs of sparse graphs (communities), which appear in most real-world complex networks, play an important role in many contexts. Computing them however is generally expensive. We propose here a measure of similarities between…

Disordered Systems and Neural Networks · Physics 2014-10-13 Matthieu Latapy , Pascal Pons

Clustering large, mixed data is a central problem in data mining. Many approaches adopt the idea of k-means, and hence are sensitive to initialisation, detect only spherical clusters, and require a priori the unknown number of clusters. We…

Machine Learning · Statistics 2020-11-13 Joshua Tobin , Mimi Zhang

In this paper, we present two main results. First, by only one conjecture (Conjecture 2.9) for recognizing a vertex symmetric graph, which is the hardest task for our problem, we construct an algorithm for finding an isomorphism between two…

Data Structures and Algorithms · Computer Science 2017-06-29 Caishi Fang

We study the problem of aggregating polygons by covering them with disjoint representative regions, thereby inducing a clustering of the polygons. Our objective is to minimize a weighted sum of the total area and the total perimeter of the…

For a set of n points in the plane, we consider the axis--aligned (p,k)-Box Covering problem: Find p axis-aligned, pairwise-disjoint boxes that together contain n-k points. In this paper, we consider the boxes to be either squares or…

Computational Geometry · Computer Science 2010-07-28 Hee-Kap Ahn , Sang Won Bae , Erik D. Demaine , Martin L. Demaine , Sang-Sub Kim , Matias Korman , Iris Reinbacher , Wanbin Son

Agglomeration-based strategies are important both within adaptive refinement algorithms and to construct scalable multilevel algebraic solvers. In order to automatically perform agglomeration of polygonal grids, we propose the use of…

Numerical Analysis · Mathematics 2023-03-17 P. F. Antonietti , N. Farenga , E. Manuzzi , G. Martinelli , L. Saverio

Deep graph clustering has recently received significant attention due to its ability to enhance the representation learning capabilities of models in unsupervised scenarios. Nevertheless, deep clustering for temporal graphs, which could…

Machine Learning · Computer Science 2024-04-12 Meng Liu , Yue Liu , Ke Liang , Wenxuan Tu , Siwei Wang , Sihang Zhou , Xinwang Liu

Graph-based subspace clustering methods have exhibited promising performance. However, they still suffer some of these drawbacks: encounter the expensive time overhead, fail in exploring the explicit clusters, and cannot generalize to…

Machine Learning · Computer Science 2021-02-23 Zhao Kang , Zhiping Lin , Xiaofeng Zhu , Wenbo Xu

High-dimensional omics datasets are routinely visualized as heatmaps, where color intensities reveal co-expression patterns and correlations. However, modern omics technologies increasingly generate matrices so large that existing visual…

Genomics · Quantitative Biology 2026-04-21 Osho Rawal , Rex Lu , Edgar Gonzalez-Kozlova , Sacha Gnjatic , Zeynep H. Gümüş

Graph-based clustering methods have demonstrated the effectiveness in various applications. Generally, existing graph-based clustering methods first construct a graph to represent the input data and then partition it to generate the…

Machine Learning · Computer Science 2019-12-17 Yuheng Jia , Hui Liu , Junhui Hou , Sam Kwong

We study streaming algorithms for Correlation Clustering. Given a graph as an arbitrary-order stream of edges, with each edge labeled as positive or negative, the goal is to partition the vertices into disjoint clusters, such that the…

Data Structures and Algorithms · Computer Science 2025-10-14 Yinhao Dong , Shan Jiang , Shi Li , Pan Peng

Graph clustering is essential in graph analysis for revealing structural patterns and node communities. Despite recent advances in self-supervised contrastive learning that have improved clustering via structural and attribute signals,…

Machine Learning · Computer Science 2026-05-28 Lei Zhang , Fubo Sun , Haipeng Yang , Zhong Guan , Likang Wu

Circle graphs are intersection graphs of chords of a circle. In this paper, we present a new algorithm for the circle graph isomorphism problem running in time $O((n+m)\alpha(n+m))$ where $n$ is the number of vertices, $m$ is the number of…

Data Structures and Algorithms · Computer Science 2019-08-27 Vít Kalisz , Pavel Klavík , Peter Zeman