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Research shows that gene duplication followed by either repurposing or removal of duplicated genes is an important contributor to evolution of gene and protein interaction networks. We aim to identify which characteristics of a network can…

Molecular Networks · Quantitative Biology 2021-07-27 Peter Crawford-Kahrl , Robert R. Nerem , Bree Cummins , Tomas Gedeon

With the rise of big data analytics, multi-layer neural networks have surfaced as one of the most powerful machine learning methods. However, their theoretical mathematical properties are still not fully understood. Training a neural…

Machine Learning · Computer Science 2021-01-01 Victor Luo , Yazhen Wang , Glenn Fung

Neuroevolution is a process of training neural networks (NN) through an evolutionary algorithm, usually to serve as a state-to-action mapping model in control or reinforcement learning-type problems. This paper builds on the Neuro Evolution…

Neural and Evolutionary Computing · Computer Science 2019-03-19 Amir Behjat , Sharat Chidambaran , Souma Chowdhury

Biological nervous systems are created in a fundamentally different way than current artificial neural networks. Despite its impressive results in a variety of different domains, deep learning often requires considerable engineering effort…

Neural and Evolutionary Computing · Computer Science 2023-07-18 Elias Najarro , Shyam Sudhakaran , Sebastian Risi

Spiking Neural Networks (SNNs) have attracted recent interest due to their energy efficiency and biological plausibility. However, the performance of SNNs still lags behind traditional Artificial Neural Networks (ANNs), as there is no…

Neural and Evolutionary Computing · Computer Science 2023-05-19 Henrique Branquinho , Nuno Lourenço , Ernesto Costa

Dynamic graph representation learning has emerged as a crucial research area, driven by the growing need for analyzing time-evolving graph data in real-world applications. While recent approaches leveraging recurrent neural networks (RNNs)…

Machine Learning · Computer Science 2024-10-28 Shengxiang Hu , Guobing Zou , Song Yang , Shiyi Lin , Yanglan Gan , Bofeng Zhang

Over the past twenty years, artificial Gene Regulatory Networks (GRNs) have shown their capacity to solve real-world problems in various domains such as agent control, signal processing and artificial life experiments. They have also…

Neural and Evolutionary Computing · Computer Science 2018-07-17 Dennis G Wilson , Kyle Harrington , Sylvain Cussat-Blanc , Hervé Luga

Graph neural networks (GNNs) are powerful machine learning models designed to handle irregularly structured data. However, their generic design often proves inadequate for analyzing brain connectomes in Alzheimer's Disease (AD),…

Machine Learning · Computer Science 2024-12-10 Zhepeng Wang , Runxue Bao , Yawen Wu , Guodong Liu , Lei Yang , Liang Zhan , Feng Zheng , Weiwen Jiang , Yanfu Zhang

This paper answers a fundamental question in artificial neural network (ANN) design: We do not need to build ANNs layer-by-layer sequentially to guarantee the Directed Acyclic Graph (DAG) property. Drawing inspiration from biological…

Neural and Evolutionary Computing · Computer Science 2024-02-07 Liangwei Yang , Hengrui Zhang , Zihe Song , Jiawei Zhang , Weizhi Zhang , Jing Ma , Philip S. Yu

Deep Generative models (DGMs) play two key roles in modern machine learning: (i) producing new information (e.g., image synthesis) and (ii) reducing dimensionality. However, traditional architectures often rely on auxiliary networks such as…

Machine Learning · Computer Science 2026-02-23 Georgi Hrusanov , Oliver Y. Chén , Julien S. Bodelet

Machine learning has rapidly evolved during the last decade, achieving expert human performance on notoriously challenging problems such as image classification. This success is partly due to the re-emergence of bio-inspired modern…

Neural and Evolutionary Computing · Computer Science 2023-08-08 Edgar Galván , Fergal Stapleton

Recent advances in neural network-based generative modeling have reignited the hopes in having computer systems capable of seamlessly conversing with humans and able to understand natural language. Neural architectures have been employed to…

Computation and Language · Computer Science 2020-08-03 Cristina Garbacea , Qiaozhu Mei

Deep neural network (DNN)-based receivers offer a powerful alternative to classical model-based designs for wireless communication, especially in complex and nonlinear propagation environments. However, their adoption is challenged by the…

Signal Processing · Electrical Eng. & Systems 2026-05-26 Yakov Gusakov , Osvaldo Simeone , Tirza Routtenberg , Nir Shlezinger

While remarkable success has been achieved through diffusion-based 3D generative models for shapes, 4D generative modeling remains challenging due to the complexity of object deformations over time. We propose DNF, a new 4D representation…

Computer Vision and Pattern Recognition · Computer Science 2024-12-09 Xinyi Zhang , Naiqi Li , Angela Dai

In this paper, we present a novel Deep Triphone Embedding (DTE) representation derived from Deep Neural Network (DNN) to encapsulate the discriminative information present in the adjoining speech frames. DTEs are generated using a four…

Sound · Computer Science 2017-10-25 Mohit Yadav , Vivek Tyagi

Self-evolving language-model agents must decide what to learn next and how to preserve what they have learned across iterations. Existing systems typically carry this cross-iteration knowledge as natural-language feedback, flat episodic…

Artificial Intelligence · Computer Science 2026-05-12 Ruiyi Yang , Zechen Li , Hao Xue , Imran Razzak , Flora D. Salim

The success of deep learning depends on finding an architecture to fit the task. As deep learning has scaled up to more challenging tasks, the architectures have become difficult to design by hand. This paper proposes an automated method,…

Neural and Evolutionary Computing · Computer Science 2017-03-07 Risto Miikkulainen , Jason Liang , Elliot Meyerson , Aditya Rawal , Dan Fink , Olivier Francon , Bala Raju , Hormoz Shahrzad , Arshak Navruzyan , Nigel Duffy , Babak Hodjat

Anomaly detection tools and methods present a key capability in modern cyberphysical and failure prediction systems. Despite the fast-paced development in deep learning architectures for anomaly detection, model optimization for a given…

Machine Learning · Computer Science 2023-05-29 Marcin Pietron , Dominik Zurek , Kamil Faber , Roberto Corizzo

Neuroevolution is an active and growing research field, especially in times of increasingly parallel computing architectures. Learning methods for Artificial Neural Networks (ANN) can be divided into two groups. Neuroevolution is mainly…

Neural and Evolutionary Computing · Computer Science 2011-04-11 Onay Urfalioglu , Orhan Arikan

Graph Neural Networks (GNNs) is an architecture for structural data, and has been adopted in a mass of tasks and achieved fabulous results, such as link prediction, node classification, graph classification and so on. Generally, for a…

Machine Learning · Computer Science 2022-05-12 Ye Tang , Xuesong Yang , Xinrui Liu , Xiwei Zhao , Zhangang Lin , Changping Peng
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