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With the internet, a massive amount of information on species abundance can be collected under citizen science programs. However, these data are often difficult to use directly in statistical inference, as their collection is generally…

Applications · Statistics 2015-02-27 Christophe Giraud , Clément Calenge , Camille Coron , Romain Julliard

To study population dynamics, ecologists and wildlife biologists use relative abundance data, which are often subject to temporal preferential sampling. Temporal preferential sampling occurs when sampling effort varies across time. To…

Methodology · Statistics 2022-12-14 Michael R. Schwob , Mevin B. Hooten , Travis McDevitt-Galles

Abundance data are used in ecology for species monitoring and conservation. These count data often display several specific characteristics like numerous missing data, high variance, and a high proportion of zeros, particularly when…

For many taxonomic groups, online biodiversity portals used by naturalists and citizen scientists constitute the primary source of distributional information. Over the last decade, site-occupancy models have been advanced as a promising…

In ecology, the description of species composition and biodiversity calls for statistical methods that involve estimating features of interest in unobserved samples based on an observed one. In the last decade, the Bayesian nonparametrics…

Methodology · Statistics 2026-04-28 Alessandro Colombi , Raffaele Argiento , Federico Camerlenghi , Lucia Paci

Statistical matching methods are widely used in the social and health sciences to estimate causal effects using observational data. Often the objective is to find comparable groups with similar covariate distributions in a dataset, with the…

Applications · Statistics 2021-01-19 Felix Bestehorn , Maike Bestehorn , Christian Kirches

Climate change is a major driver of biodiversity loss, changing the geographic range and abundance of many species. However, there remain significant knowledge gaps about the distribution of species, due principally to the amount of effort…

Computer Vision and Pattern Recognition · Computer Science 2023-05-03 Mélisande Teng , Amna Elmustafa , Benjamin Akera , Hugo Larochelle , David Rolnick

In surveys, the interest lies in estimating finite population parameters such as population totals and means. In most surveys, some auxiliary information is available at the estimation stage. This information may be incorporated in the…

Methodology · Statistics 2022-08-23 Mehdi Dagdoug , Camelia Goga , David Haziza

Due to climate-induced changes, many habitats are experiencing range shifts away from their traditional geographic locations (Piguet, 2011). We propose a solution to accurately model whether bird species are present in a specific habitat…

Artificial Intelligence · Computer Science 2025-07-16 Emir Durakovic , Min-Hong Shih

Citizen science databases that consist of volunteer-led sampling efforts of species communities are relied on as essential sources of data in ecology. Summarizing such data across counties with frequentist-valid prediction sets for each…

Methodology · Statistics 2023-11-28 Elizabeth Bersson , Peter D. Hoff

We consider the problem of forecasting the regions at higher risk for newly introduced invasive species. Favourable and unfavourable regions may indeed not be known a priori, especially for exotic species whose hosts in native range and…

Analysis of PDEs · Mathematics 2009-07-07 Michel Cristofol , Lionel Roques

To address the interlinked biodiversity and climate crises, we need an understanding of where species occur and how these patterns are changing. However, observational data on most species remains very limited, and the amount of data…

Machine Learning · Computer Science 2024-03-29 Hager Radi Abdelwahed , Mélisande Teng , David Rolnick

Mechanisms leading to speciation are a major focus in evolutionary biology. In this paper, we present and study a stochastic model of population where individuals, with type a or A, are equivalent from ecological, demographical and spatial…

Populations and Evolution · Quantitative Biology 2017-04-20 Camille Coron , Manon Costa , Hélène Leman , Charline Smadi

Big data presents potential but unresolved value as a source for analysis and inference. However,selection bias, present in many of these datasets, needs to be accounted for so that appropriate inferences can be made on the target…

Methodology · Statistics 2025-01-09 Lyndon Ang , Robert Clark , Bronwyn Loong , Anders Holmberg

Reductions in natural habitats urge that we better understand species' interconnection and how biological communities respond to environmental changes. However, ecological studies of species' interactions are limited by their geographic and…

Methodology · Statistics 2023-02-21 Georgia Papadogeorgou , Carolina Bello , Otso Ovaskainen , David B. Dunson

1. Predicting space use patterns of animals from their interactions with the environment is fundamental for understanding the effect of habitat changes on ecosystem functioning. Recent attempts to address this problem have sought to unify…

Quantitative Methods · Quantitative Biology 2015-01-23 Jonathan R. Potts , Guillaume Bastille-Rousseau , Dennis L. Murray , James A. Schaefer , Mark A. Lewis

When evaluating the ecological value of land use within a landscape, investigators typically rely on measures of habitat selection and habitat quality. Traditional measures of habitat selection and habitat quality require data from resource…

Populations and Evolution · Quantitative Biology 2016-07-19 Philip T. Patton , Krishna Pacifici , Jaime Collazo

This paper explores the topic of preferential sampling, specifically situations where monitoring sites in environmental networks are preferentially located by the designers. This means the data arising from such networks may not accurately…

Applications · Statistics 2014-12-04 James V. Zidek , Gavin Shaddick , Carolyn G. Taylor

Global species richness is a key biodiversity metric. Despite recent efforts to estimate global species richness, the resulting estimates have been highly uncertain and often logically inconsistent. Estimates lower down either the taxonomic…

Applications · Statistics 2017-11-10 Huan Lin , M. J. Caley , Scott A. Sisson

This chapter aims to inform a practitioner about current methods for predicting potential distributions of invasive species. It mostly addresses single species models, covering the conceptual bases, touching on mechanistic models, and then…

Populations and Evolution · Quantitative Biology 2015-07-31 Jane Elith
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