Related papers: Decomposition of Trees and Paths via Correlation
Recombining trinomial trees are a workhorse for modeling discrete-event systems in option pricing, logistics, and feedback control. Because each node stores a state-dependent quantity, a depth-$D$ tree naively yields $\mathcal{O}(3^{D})$…
Combinatorial optimization lies at the core of many real-world problems. Especially since the rise of graph neural networks (GNNs), the deep learning community has been developing solvers that derive solutions to NP-hard problems by…
We prove that deciding whether the edge set of a graph can be partitionned into two spanning trees with orientation constraints is NP-complete. If P $\neq$ NP then this disproves a conjecture of Recski.
We consider two decomposition problems in directed graphs. We say that a digraph is $k$-bounded for some $k \in \mathbb{Z}_{\geq 1}$ if each of its connected components contains at most $k$ arcs. For the first problem, a directed linear…
We consider the problem of assigning radii to a given set of points in the plane, such that the resulting set of circles is connected, and the sum of radii is minimized. We show that the problem is polynomially solvable if a connectivity…
An ordered labeled tree is a tree in which the nodes are labeled and the left-to-right order among siblings is relevant. The edit distance between two ordered labeled trees is the minimum cost of changing one tree into the other through a…
We state a combinatorial optimization problem whose feasible solutions define both a decomposition and a node labeling of a given graph. This problem offers a common mathematical abstraction of seemingly unrelated computer vision tasks,…
Many popular algorithms for searching the space of leaf-labelled trees are based on tree rearrangement operations. Under any such operation, the problem is reduced to searching a graph where vertices are trees and (undirected) edges are…
Geometric embedding of graphs in a point set in the plane is a well known problem. In this paper, the complexity of a variant of this problem, where the point set is bounded by a simple polygon, is considered. Given a point set in the plane…
A Supertree synthesizes the topologies of a set of phylogenetic trees carrying overlapping taxa set. In process, conflicts in the tree topologies are aimed to be resolved with the consensus clades. Such a problem is proved to be NP-hard.…
We study the problem of partitioning a set of $n$ objects in a metric space into $k$ clusters $V_1,\dots,V_k$. The quality of the clustering is measured by considering the vector of cluster costs and then minimizing some monotone symmetric…
The NP-hard maximum value preordering problem is both a joint relaxation and a hybrid of the clique partition problem (a clustering problem) and the partial ordering problem. Toward approximate solutions and lower bounds, we introduce a…
Tree-width and path-width are widely successful concepts. Many NP-hard problems have efficient solutions when restricted to graphs of bounded tree-width. Many efficient algorithms are based on a tree decomposition. Sometimes the more…
Cluster deletion is an NP-hard graph clustering objective with applications in computational biology and social network analysis, where the goal is to delete a minimum number of edges to partition a graph into cliques. We first provide a…
The cable-trench problem is defined as a linear combination of the shortest path and the minimum spanning tree problem. In particular, the goal is to find a spanning tree that simultaneously minimizes its total length and the total path…
The minimum-cost arborescence problem is a well-studied problem in the area of graph theory, with known polynomial-time algorithms for solving it. Previous literature introduced new variations on the original problem with different…
Mayer's theory of cluster integrals allows one to write the partition function of a gas model as a generating function of weighted graphs. Recently, Labelle, Leroux and Ducharme have studied the graph weights arising from the…
Reconciling gene trees with a species tree is a fundamental problem to understand the evolution of gene families. Many existing approaches reconcile each gene tree independently. However, it is well-known that the evolution of gene families…
The complexity of the maximum common connected subgraph problem in partial $k$-trees is still not fully understood. Polynomial-time solutions are known for degree-bounded outerplanar graphs, a subclass of the partial $2$-trees. On the other…
Convex clustering refers, for given $\left\{x_1, \dots, x_n\right\} \subset \mathbb{R}^p$, to the minimization of \begin{eqnarray*} u(\gamma) & = & \underset{u_1, \dots, u_n }{\arg\min}\;\sum_{i=1}^{n}{\lVert x_i - u_i \rVert^2} + \gamma…