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Machine learning has gained widespread attention as a powerful tool to identify structure in complex, high-dimensional data. However, these techniques are ostensibly inapplicable for experimental systems where data is scarce or expensive to…

Topological data analysis (TDA) detects geometric structure in biological data. However, many TDA algorithms are memory intensive and impractical for massive datasets. Here, we introduce a statistical protocol that reduces TDA's memory…

Quantitative Methods · Quantitative Biology 2025-09-05 Andrew J. Stier , Naichen Shi , Raed Al Kontar , Chad Giusti , Marc G. Berman

Graph partitioning is one of an important set of well-known compute-intense (NP-hard) graph problems that devolve to discrete constrained optimization. We sampled solutions to the problem via two different quantum-ready methods to…

Tensor decomposition on big data has attracted significant attention recently. Among the most popular methods is a class of algorithms that leverages compression in order to reduce the size of the tensor and potentially parallelize…

Machine Learning · Computer Science 2018-11-20 Georgios Tsitsikas , Evangelos E. Papalexakis

Context compression aims to shorten long context inputs with minimal information loss for LLM inference acceleration. While existing methods have shown promise, they typically rely on complex compression modules or compression-specific…

Artificial Intelligence · Computer Science 2026-05-28 Guoxin Ma , Yibing Liu , Chengzhengxu Li , Yu Liang , Yan Wang , Yueyang Zhang , Kecheng Chen , Zhaohan Zhang , Zhiyuan Sun , Daiting Shi

Karp et al. (1988) described Deferred Data Structures for Multisets as "lazy" data structures which partially sort data to support online rank and select queries, with the minimum amount of work in the worst case over instances of size $n$…

Data Structures and Algorithms · Computer Science 2016-10-03 Jérémy Barbay , Carlos Ochoa , Srinivasa Rao Satti

Compressing word embeddings is important for deploying NLP models in memory-constrained settings. However, understanding what makes compressed embeddings perform well on downstream tasks is challenging---existing measures of compression…

Machine Learning · Computer Science 2020-01-16 Avner May , Jian Zhang , Tri Dao , Christopher Ré

Prior studies have shown that the retention time of the non-volatile spin-transfer torque RAM (STT-RAM) can be relaxed in order to reduce STT-RAM's write energy and latency. However, since different applications may require different…

Computers and Society · Computer Science 2024-07-30 Dhruv Gajaria , Kyle Kuan , Tosiron Adegbija

Response time requirements for big data processing systems are shrinking. To meet this strict response time requirement, many big data systems store all or most of their data in main memory to reduce the access latency. Main memory…

Hardware Architecture · Computer Science 2016-08-29 Jason Lowe-Power , Mark D. Hill , David A. Wood

Algorithm research focuses primarily on how many operations processors need to do (time complexity). But for many problems, both the runtime and energy used are dominated by memory accesses. In this paper, we present the first broad survey…

Data Structures and Algorithms · Computer Science 2025-12-01 Hayden Rome , Jayson Lynch , Jeffery Li , Chirag Falor , Neil Thompson

Data compression is a ubiquitous aspect of modern information technology, and the advent of quantum information raises the question of what types of compression are feasible for quantum data, where it is especially relevant given the…

Quantum Physics · Physics 2014-12-17 Lee A. Rozema , Dylan H. Mahler , Alex Hayat , Peter S. Turner , Aephraim M. Steinberg

Large pre-trained models have achieved outstanding results in sequence modeling. The Transformer block and its attention mechanism have been the main drivers of the success of these models. Recently, alternative architectures, such as…

Machine Learning · Computer Science 2025-01-29 J. Pablo Muñoz , Jinjie Yuan , Nilesh Jain

In scientific fields such as quantum computing, physics, chemistry, and machine learning, high dimensional data are typically represented using sparse tensors. Tensor contraction is a popular operation on tensors to exploit meaning or alter…

Data Structures and Algorithms · Computer Science 2024-10-15 Andrew Ensinger , Gabriel Kulp , Victor Agostinelli , Dennis Lyakhov , Lizhong Chen

Sequence representations supporting not only direct access to their symbols, but also rank/select operations, are a fundamental building block in many compressed data structures. Several recent applications need to represent highly…

Data Structures and Algorithms · Computer Science 2019-11-25 Alberto Ordóñez , Gonzalo Navarro , Nieves R. Brisaboa

Data compression is widely used in contemporary column-oriented DBMSes to lower space usage and to speed up query processing. Pioneering systems have introduced compression to tackle the disk bandwidth bottleneck by trading CPU processing…

Databases · Computer Science 2021-05-20 Alexander Slesarev , Evgeniy Klyuchikov , Kirill Smirnov , George Chernishev

Concurrent data structures often require additional memory for handling synchronization issues in addition to memory for storing elements. Depending on the amount of this additional memory, implementations can be more or less…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-17 Vitaly Aksenov , Nikita Koval , Petr Kuznetsov , Anton Paramonov

In this article, a novel fast randomized subspace system identification method for estimating combined deterministic-stochastic LTI state-space models, is proposed. The algorithm is especially well-suited to identify high-order and…

Systems and Control · Electrical Eng. & Systems 2023-12-12 Vatsal Kedia , Debraj Chakraborty

Temporal graphs model relationships among entities over time. Recent studies applied temporal graphs to abstract complex systems such as continuous communication among participants of social networks. Often, the amount of data is larger…

Data Structures and Algorithms · Computer Science 2022-04-27 Luiz F. A. Brito , Bruno A. N. Travençolo , Marcelo K. Albertini

Spaced seeds are important tools for similarity search in bioinformatics, and using several seeds together often significantly improves their performance. With existing approaches, however, for each seed we keep a separate linear-size data…

Data Structures and Algorithms · Computer Science 2014-03-11 Travis Gagie , Giovanni Manzini , Daniel Valenzuela

The recent advent of programmable switches makes distributed algorithms readily deployable in real-world datacenter networks. However, there are still gaps between theory and practice that prevent the smooth adaptation of CONGEST algorithms…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-16 Ran Ben Basat , Keren Censor-Hillel , Yi-Jun Chang , Wenchen Han , Dean Leitersdorf , Gregory Schwartzman
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