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Determining how the brain stores information is one of the most pressing problems in neuroscience. In many instances, the collection of stimuli for a given neuron can be modeled by a convex set in $\mathbb{R}^d$. Combinatorial objects known…

Combinatorics · Mathematics 2019-05-29 R. Amzi Jeffs , Mohamed Omar , Natchanon Suaysom , Aleina Wachtel , Nora Youngs

We study the open, closed, and non-degenerate embedding dimensions of neural codes, which are the smallest respective dimensions in which one can find a realization of a code consisting of convex sets that are open, closed, or…

Combinatorics · Mathematics 2023-06-13 R. Amzi Jeffs

Neural codes, represented as collections of binary strings called codewords, are used to encode neural activity. A code is called convex if its codewords are represented as an arrangement of convex open sets in Euclidean space. Previous…

Combinatorics · Mathematics 2022-08-10 Katherine Johnston , Anne Shiu , Clare Spinner

Low-dimensional embeddings are essential for machine learning tasks involving graphs, such as node classification, link prediction, community detection, network visualization, and network compression. Although recent studies have identified…

Machine Learning · Computer Science 2025-03-04 Nikolaos Nakis , Niels Raunkjær Holm , Andreas Lyhne Fiehn , Morten Mørup

Network embedding is a general-purpose machine learning technique that encodes network structure in vector spaces with tunable dimension. Choosing an appropriate embedding dimension -- small enough to be efficient and large enough to be…

Physics and Society · Physics 2021-06-22 Weiwei Gu , Aditya Tandon , Yong-Yeol Ahn , Filippo Radicchi

We study asymptotic lower and upper bounds for the sizes of constant dimension codes with respect to the subspace or injection distance, which is used in random linear network coding. In this context we review known upper bounds and show…

Combinatorics · Mathematics 2017-12-06 Daniel Heinlein , Sascha Kurz

We investigate combinatorial, topological and algebraic properties of certain classes of neural codes. We look into a conjecture that states if the minimal \textit{open convex} embedding dimension of a neural code is two then its minimal…

Geometric Topology · Mathematics 2023-09-21 Neha Gupta , Suhith K N

Graphs are ubiquitous due to their flexibility in representing social and technological systems as networks of interacting elements. Graph representation learning methods, such as node embeddings, are powerful approaches to map nodes into a…

Machine Learning · Computer Science 2023-10-03 Simone Piaggesi , Megha Khosla , André Panisson , Avishek Anand

Codes in finite projective spaces equipped with the subspace distance have been proposed for error control in random linear network coding. Here we collect the present knowledge on lower and upper bounds for binary subspace codes for…

Combinatorics · Mathematics 2018-10-01 Daniel Heinlein , Sascha Kurz

Much work has been done to identify which binary codes can be represented by collections of open convex or closed convex sets. While not all binary codes can be realized by such sets, here we prove that every binary code can be realized by…

Combinatorics · Mathematics 2018-04-30 Megan K. Franke , Samuel Muthiah

This paper studies the minimal dimension required to embed subset memberships ($m$ elements and ${m\choose k}$ subsets of at most $k$ elements) into vector spaces, denoted as Minimal Embeddable Dimension (MED). The tight bounds of MED are…

Machine Learning · Computer Science 2026-01-30 Zihao Wang , Hang Yin , Lihui Liu , Hanghang Tong , Yangqiu Song , Ginny Wong , Simon See

Embedding spaces contain interpretable dimensions indicating gender, formality in style, or even object properties. This has been observed multiple times. Such interpretable dimensions are becoming valuable tools in different areas of…

Computation and Language · Computer Science 2024-04-04 Katrin Erk , Marianna Apidianaki

In the field of node representation learning the task of interpreting latent dimensions has become a prominent, well-studied research topic. The contribution of this work focuses on appraising the interpretability of another…

Social and Information Networks · Computer Science 2025-01-22 Dougal Shakespeare , Camille Roth

In this paper, we describe the properties of the $i$-components of Hamming codes. We suggest constructions of the admissible families of components of Hamming codes. It is shown that every $q$-ary code of length $m$ and minimum distance 5…

Information Theory · Computer Science 2012-02-03 Alexander M. Romanov

Lifted maximum rank distance (MRD) codes, which are constant dimension codes, are considered. It is shown that a lifted MRD code can be represented in such a way that it forms a block design known as a transversal design. A slightly…

Information Theory · Computer Science 2016-11-17 Tuvi Etzion , Natalia Silberstein

The main result here is a characterisation of binary $2$-neighbour-transitive codes with minimum distance at least $5$ via their minimal subcodes, which are found to be generated by certain designs. The motivation for studying this class of…

Combinatorics · Mathematics 2018-07-27 Daniel R. Hawtin , Cheryl E. Praeger

Neural codes serve as a language for neurons in the brain. Convex codes, which arise from the pattern of intersections of convex sets in Euclidean space, are of particular relevance to neuroscience. Not every code is convex, however, and…

Combinatorics · Mathematics 2017-05-31 Joshua Cruz , Chad Giusti , Vladimir Itskov , Bill Kronholm

We consider the problem of embedding a relation, represented as a directed graph, into Euclidean space. For three types of embeddings motivated by the recent literature on knowledge graphs, we obtain characterizations of which relations…

Machine Learning · Computer Science 2023-01-19 Robi Bhattacharjee , Sanjoy Dasgupta

The brain encodes spacial structure through a combinatorial code of neural activity. Experiments suggest such codes correspond to convex areas of the subject's environment. We present an intrinsic condition that implies a neural code may…

Combinatorics · Mathematics 2016-10-20 Robert Williams

How related are the representations learned by neural language models, translation models, and language tagging tasks? We answer this question by adapting an encoder-decoder transfer learning method from computer vision to investigate the…

Computation and Language · Computer Science 2025-12-11 Richard Antonello , Javier Turek , Vy Vo , Alexander Huth
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