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Delayed processes are ubiquitous in biological systems and are often characterized by delay differential equations (DDEs) and their extension to include stochastic effects. DDEs do not explicitly incorporate intermediate states associated…

Quantitative Methods · Quantitative Biology 2016-09-28 Jingchen Feng , Stuart Sevier , Bin Huang , Dongya Jia , Herbert Levine

Causal processes in nature may contain cycles, and real datasets may violate causal sufficiency as well as contain selection bias. No constraint-based causal discovery algorithm can currently handle cycles, latent variables and selection…

Machine Learning · Statistics 2018-05-08 Eric V. Strobl

Knowing which latent conditions lead to a particular outcome is useful for critically examining claims made about complex event outcomes. Identifying implied conditions and examining their influence on an outcome is challenging. We handle…

Computation and Language · Computer Science 2025-06-03 Sai Vallurupalli , Francis Ferraro

Cell-fate transition can be modeled by ordinary differential equations (ODEs) which describe the behavior of several molecules in interaction, and for which each stable equilibrium corresponds to a possible phenotype (or 'biological…

Dynamical Systems · Mathematics 2021-04-12 Nastassia Pouradier Duteil , Jules Guilberteau , Camille Pouchol , Nastassia Duteil

Top-down causation has been suggested to occur at all scales of biological organization as a mechanism for explaining the hierarchy of structure and causation in living systems. Here we propose that a transition from bottom-up to top-down…

Adaptation and Self-Organizing Systems · Physics 2012-07-23 Sara Imari Walker , Luis Cisneros , Paul C. W. Davies

We comment on some recent, yet unpublished results concerning instabilities in complex systems and their applications. In particular, we briefly describe main observations during extensive computer simulations of two lattice nonequilibrium…

Statistical Mechanics · Physics 2009-11-07 J. Marro , J. M. Cortes , Pablo I. Hurtado

Different scheduling algorithms for mixed criticality systems have been recently proposed. The common denominator of these algorithms is to discard low critical tasks whenever high critical tasks are in lack of computation resources. This…

Operating Systems · Computer Science 2020-03-13 Jalil Boudjadar , Saravanan Ramanathan , Arvind Easwaran , Ulrik Nyman

Critical transitions, or large changes in the state of a system after a small change in the system's external conditions or parameters, commonly occur in a wide variety of disciplines, from the biological and social sciences to physics.…

Statistical Mechanics · Physics 2021-10-26 George I. Hagstrom , Simon A. Levin

Most existing necessary conditions for optimal control based on adjoining methods require both state and costate information, yet the unobservability of costates for a given feasible trajectory impedes the determination of optimality in…

Optimization and Control · Mathematics 2025-10-27 Yunan Wang , Chuxiong Hu , Yujie Lin , Zeyang Li , Shize Lin , Suqin He

Linear time-invariant systems are very popular models in system theory and applications. A fundamental problem in system identification that remains rather unaddressed in extant literature is to leverage commonalities amongst related linear…

Machine Learning · Statistics 2024-01-03 Aditya Modi , Mohamad Kazem Shirani Faradonbeh , Ambuj Tewari , George Michailidis

The evolution of cooperative behaviour is studied in the deterministic version of the Prisoners' Dilemma on a two-dimensional lattice. The payoff parameter is set at the critical region $1.8 < b < 2.0$ , where clusters of cooperators are…

Nuclear Theory · Physics 2009-10-28 Zhen Cao , Rudolph C. Hwa

Conditional computing processes an input using only part of the neural network's computational units. Learning to execute parts of a deep convolutional network by routing individual samples has several advantages: Reducing the computational…

Computer Vision and Pattern Recognition · Computer Science 2024-07-09 Ufuk Can Bicici , Tuna Han Salih Meral , Lale Akarun

We numerically demonstrate that collective bifurcations in two-dimensional lattices of locally coupled logistic maps share most of the defining features of equilibrium second-order phase transitions. Our simulations suggest that these…

Adaptation and Self-Organizing Systems · Physics 2009-11-11 P. Marcq , H. Chate , P. Manneville

We compare two recently proposed methods for the characterization of phase transitions in small systems. The usefulness of these techniques is evaluated for the case of structural transition in alanine-based peptides.

Statistical Mechanics · Physics 2007-05-23 Nelson A. Alves , U. H. E. Hansmann , Y. Peng

Critical transitions in multistable systems have been discussed as models for a variety of phenomena ranging from the extinctions of species to socio-economic changes and climate transitions between ice-ages and warm-ages. From bifurcation…

Data Analysis, Statistics and Probability · Physics 2018-12-24 Xiaozhu Zhang , Christian Kuehn , Sarah Hallerberg

This paper explores the connection between dynamical system properties and statistical physics of ensembles of such systems. Simple models are used to give novel phase transitions; particularly for finite N particle systems with many…

Statistical Mechanics · Physics 2007-11-06 Ajay Patwardhan

The analysis of concurrent and reactive systems is based to a large degree on various notions of process equivalence, ranging, on the so-called linear-time/branching-time spectrum, from fine-grained equivalences such as strong bisimilarity…

Logic in Computer Science · Computer Science 2014-10-17 Alexander Kurz , Stefan Milius , Dirk Pattinson , Lutz Schröder

Based on the two-dimensional lattice fermion model, we discuss transitions between different pairing states. Each phase is labeled by an integer which is a topological invariant and characterized by vortices of the Bloch wavefunction. The…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 Y. Morita , Y. Hatsugai

Systems biology models are useful models of complex biological systems that may require a large amount of experimental data to fit each model's parameters or to approximate a likelihood function. These models range from a few to thousands…

Quantitative Methods · Quantitative Biology 2024-07-12 Vincent D. Zaballa , Elliot E. Hui

Behavior trees represent a hierarchical and modular way of combining several low-level control policies into a high-level task-switching policy. Hybrid dynamical systems can also be seen in terms of task switching between different…

Systems and Control · Electrical Eng. & Systems 2021-11-11 Christopher Iliffe Sprague , Petter Ögren
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