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Graphs and networks are common ways of depicting biological information. In biology, many different biological processes are represented by graphs, such as regulatory networks, metabolic pathways and protein--protein interaction networks.…

Applications · Statistics 2010-11-16 Caiyan Li , Hongzhe Li

Considering a regression model, we address the question of testing the nullity of the regression function. The testing procedure is available when the variance of the observations is unknown and does not depend on any prior information on…

Statistics Theory · Mathematics 2019-04-08 Thi Thien Trang Bui

This paper studies graph-based active learning, where the goal is to reconstruct a binary signal defined on the nodes of a weighted graph, by sampling it on a small subset of the nodes. A new sampling algorithm is proposed, which…

Machine Learning · Computer Science 2016-05-19 Eyal En Gad , Akshay Gadde , A. Salman Avestimehr , Antonio Ortega

We propose an efficient nonparametric strategy for learning a message operator in expectation propagation (EP), which takes as input the set of incoming messages to a factor node, and produces an outgoing message as output. This learned…

For a graph representation of a dataset, a straightforward normality measure for a sample can be its graph degree. Considering a weighted graph, degree of a sample is the sum of the corresponding row's values in a similarity matrix. The…

Machine Learning · Computer Science 2018-02-06 Caglar Aytekin , Francesco Cricri , Lixin Fan , Emre Aksu

Graph neural network (GNN) is achieving remarkable performances in a variety of application domains. However, GNN is vulnerable to noise and adversarial attacks in input data. Making GNN robust against noises and adversarial attacks is an…

Machine Learning · Computer Science 2022-08-04 Bharat Runwal , Vivek , Sandeep Kumar

Graph signals are widely used to describe vertex attributes or features in graph-structured data, with applications spanning the internet, social media, transportation, sensor networks, and biomedicine. Graph signal processing (GSP) has…

Signal Processing · Electrical Eng. & Systems 2025-05-22 Yu Zhang , Linyu Peng , Bing-Zhao Li

Graph neural networks (GNNs) have become a powerful tool for processing graph-structured data but still face challenges in effectively aggregating and propagating information between layers, which limits their performance. We tackle this…

Machine Learning · Computer Science 2023-02-09 Maxim Fishman , Chaim Baskin , Evgenii Zheltonozhskii , Almog David , Ron Banner , Avi Mendelson

Node classification on graphs is a significant task with a wide range of applications, including social analysis and anomaly detection. Even though graph neural networks (GNNs) have produced promising results on this task, current…

Machine Learning · Computer Science 2023-06-16 Jingyang Yuan , Xiao Luo , Yifang Qin , Yusheng Zhao , Wei Ju , Ming Zhang

Many applications of machine learning require a model to make accurate pre-dictions on test examples that are distributionally different from training ones, while task-specific labels are scarce during training. An effective approach to…

Machine Learning · Computer Science 2020-02-20 Weihua Hu , Bowen Liu , Joseph Gomes , Marinka Zitnik , Percy Liang , Vijay Pande , Jure Leskovec

The fundamental principle of Graph Neural Networks (GNNs) is to exploit the structural information of the data by aggregating the neighboring nodes using a `graph convolution' in conjunction with a suitable choice for the network…

Machine Learning · Computer Science 2023-11-01 Mahalakshmi Sabanayagam , Pascal Esser , Debarghya Ghoshdastidar

Predicting gene functions is a challenge for biologists in the post genomic era. Interactions among genes and their products compose networks that can be used to infer gene functions. Most previous studies adopt a linkage assumption, i.e.,…

Molecular Networks · Quantitative Biology 2022-04-25 Xin Li , Hsinchun Chen , Jiexun Li , Zhu Zhang

Learning meaningful graphs from data plays important roles in many data mining and machine learning tasks, such as data representation and analysis, dimension reduction, data clustering, and visualization, etc. In this work, for the first…

Machine Learning · Computer Science 2020-07-30 Yongyu Wang , Zhiqiang Zhao , Zhuo Feng

In this article a surprising result is demonstrated using the neural tangent kernel. This kernel is defined as the inner product of the vector of the gradient of an underlying model evaluated at training points. This kernel is used to…

Artificial Intelligence · Computer Science 2021-04-14 Matt Calder

Graph-based clustering has shown promising performance in many tasks. A key step of graph-based approach is the similarity graph construction. In general, learning graph in kernel space can enhance clustering accuracy due to the…

Machine Learning · Computer Science 2019-05-22 Zhao Kang , Honghui Xu , Boyu Wang , Hongyuan Zhu , Zenglin Xu

Analysis of signals defined on complex topologies modeled by graphs is a topic of increasing interest. Signal decomposition plays a crucial role in the representation and processing of such information, in particular, to process graph…

Signal Processing · Electrical Eng. & Systems 2025-02-18 Harry H. Behjat , Carl-Fredrik Westin , Rik Ossenkoppele , Dimitri Van De Ville

This work proposes a framework LGKDE that learns kernel density estimation for graphs. The key challenge in graph density estimation lies in effectively capturing both structural patterns and semantic variations while maintaining…

Machine Learning · Computer Science 2026-05-27 Xudong Wang , Ziheng Sun , Chris Ding , Jicong Fan

We introduce propagation kernels, a general graph-kernel framework for efficiently measuring the similarity of structured data. Propagation kernels are based on monitoring how information spreads through a set of given graphs. They leverage…

Machine Learning · Statistics 2014-10-14 Marion Neumann , Roman Garnett , Christian Bauckhage , Kristian Kersting

Stochastic gradient descent algorithms for training linear and kernel predictors are gaining more and more importance, thanks to their scalability. While various methods have been proposed to speed up their convergence, the model selection…

Machine Learning · Computer Science 2014-06-17 Francesco Orabona

We consider the problem of inferring the unobserved edges of a graph from data supported on its nodes. In line with existing approaches, we propose a convex program for recovering a graph Laplacian that is approximately diagonalizable by a…

Signal Processing · Electrical Eng. & Systems 2020-10-16 T. Mitchell Roddenberry , Madeline Navarro , Santiago Segarra