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CHEMSMART (Chemistry Simulation and Modeling Automation Toolkit) is an open-source, Python-based framework designed to streamline quantum chemistry workflows for homogeneous catalysis and molecular modeling. By integrating job preparation,…

Chemical Physics · Physics 2025-08-28 Xinglong Zhang , Huiwen Tan , Jingyi Liu , Zihan Li , Lewen Wang , Benjamin W. J. Chen

Chemistry as an unconventional computing medium presently lacks a systematic approach to gather, store, and sort data over time. To build more complicated systems in chemistries, the ability to look at data in the past would be a valuable…

Molecular Networks · Quantitative Biology 2015-04-02 Josh Moles , Peter Banda , Christof Teuscher

Recent developments in many-body potential energy representation via deep learning have brought new hopes to addressing the accuracy-versus-efficiency dilemma in molecular simulations. Here we describe DeePMD-kit, a package written in…

Computational Physics · Physics 2018-05-23 Han Wang , Linfeng Zhang , Jiequn Han , Weinan E

Accurate low dimension chemical kinetic models for methane are an essential component in the design of efficient gas turbine combustors. Kinetic models coupled to computational fluid dynamics (CFD) provide quick and efficient ways to test…

Chemical Physics · Physics 2022-06-10 Mark Kelly , Gilles Bourque , Stephen Dooley

The current irregularities in existing public Fire and Smoke Detection (FSD) datasets have become a bottleneck in the advancement of FSD technology. Upon in-depth analysis, we identify the core issue as the lack of standardized dataset…

Computer Vision and Pattern Recognition · Computer Science 2024-10-23 Xiaoyi Han , Nan Pu , Zunlei Feng , Yijun Bei , Qifei Zhang , Lechao Cheng , Liang Xue

SocialED is a comprehensive, open-source Python library designed to support social event detection (SED) tasks, integrating 19 detection algorithms and 14 diverse datasets. It provides a unified API with detailed documentation, offering…

Machine Learning · Computer Science 2024-12-19 Kun Zhang , Xiaoyan Yu , Pu Li , Hao Peng , Philip S. Yu

Large language models (LLMs) have made impressive progress in chemistry applications. However, the community lacks an LLM specifically designed for chemistry. The main challenges are two-fold: firstly, most chemical data and scientific…

Deep learning is a potential approach to automatically develop kinetic models from experimental data. We propose a deep neural network model of KiNet to represent chemical kinetics. KiNet takes the current composition states and predicts…

Computational Physics · Physics 2021-08-03 Weiqi Ji , Sili Deng

Retrieval-Augmented Generation (RAG) systems in chemistry heavily depend on accurate and relevant retrieval of chemical literature. However, general-purpose text embedding models frequently fail to adequately represent complex chemical…

Temperature is a fundamental regulator of chemical and biochemical kinetics, yet capturing nonlinear thermal effects directly from experimental data remains a major challenge due to limited throughput and model flexibility. Recent advances…

Quantitative Methods · Quantitative Biology 2025-12-23 Mamoru Saita , Yutaka Hori

Average-atom models are an important tool in studying matter under extreme conditions, such as those conditions experienced in planetary cores, brown and white dwarfs, and during inertial confinement fusion. In the right context,…

Plasma Physics · Physics 2022-08-31 Timothy J. Callow , Daniel Kotik , Eli Kraisler , Attila Cangi

Developing efficient and accurate algorithms for chemistry integration is a challenging task due to its strong stiffness and high dimensionality. The current work presents a deep learning-based numerical method called DeepCombustion0.0 to…

Chemical Physics · Physics 2020-12-24 Tianhan Zhang , Yaoyu Zhang , Weinan E , Yiguang Ju

Accurate and efficient numerical simulation of ammonia combustion is critical for advancing ammonia-based energy systems, where turbulent flame dynamics and pollutant formation strongly affect practical applicability. However, such…

Fluid Dynamics · Physics 2025-09-26 Ke Xiao , Yangchen Xu , Han Li , Zhi X. Chen

A combustion chemistry acceleration scheme is developed based on deep operator networks (DeepONets). The scheme is based on the identification of combustion reaction dynamics through a modified DeepOnet architecture such that the solutions…

Chemical Physics · Physics 2023-04-25 Anuj Kumar , Tarek Echekki

Solving for detailed chemical kinetics remains one of the major bottlenecks for computational fluid dynamics simulations of reacting flows using a finite-rate-chemistry approach. This has motivated the use of fully connected artificial…

Computational Engineering, Finance, and Science · Computer Science 2021-10-11 Opeoluwa Owoyele , Pinaki Pal

The urgency of the energy transition requires improving the performance and longevity of hydrogen technologies. AlphaPEM is a dynamic one-dimensional (1D) physics-based PEM fuel cell system simulator, programmed in Python and experimentally…

Systems and Control · Electrical Eng. & Systems 2026-01-28 Raphaël Gass , Zhongliang Li , Rachid Outbib , Samir Jemeï , Daniel Hissel

Understanding the combustion chemistry of acetaldehyde is crucial to developing robust and accurate combustion chemistry models for practical fuels, especially for biofuels. This study aims to reevaluate the important rate and thermodynamic…

Chemical Physics · Physics 2024-09-09 Xinrui Ren , Hongqing Wu , Ruoyue Tang , Yanqing Cui , Mingrui Wang , Song Cheng

The ensemble empirical mode decomposition (EEMD) and its complete variant (CEEMDAN) are adaptive, noise-assisted data analysis methods that improve on the ordinary empirical mode decomposition (EMD). All these methods decompose possibly…

Computation · Statistics 2017-07-04 P. J. J. Luukko , J. Helske , E. Räsänen

A high-order scheme for direct numerical simulations of turbulent combustion is discussed. Its implementation in the massively parallel and publicly available Pencil Code is validated with the focus on hydrogen combustion. Ignition delay…

Solar and Stellar Astrophysics · Physics 2010-10-28 N. Babkovskaia , N. E. L. Haugen , A. Brandenburg

New experimental data are collected for methyl-cyclohexane (MCH) autoignition in a heated rapid compression machine (RCM). Three mixtures of MCH/O2/N2/Ar at equivalence ratios of $\phi$=0.5, 1.0, and 1.5 are studied and the ignition delays…

Chemical Physics · Physics 2017-06-12 Bryan W. Weber , WIlliam J. Pitz , Marco Mehl , Emma Silke , Alexander C. Davis , Chih-Jen Sung