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The convergence of artificial intelligence (AI) and synthetic biology is rapidly accelerating the pace of biological discovery and engineering. AI techniques, such as large language models and biological design tools, are enabling the…

Other Quantitative Biology · Quantitative Biology 2024-05-01 Cindy Vindman , Benjamin Trump , Christopher Cummings , Madison Smith , Alexander J. Titus , Ken Oye , Valentina Prado , Eyup Turmus , Igor Linkov

Evolution is one of the major omnipresent powers in the universe that has been studied for about two centuries. Recent scientific and technical developments make it possible to make the transition from passively understanding to actively…

Neural and Evolutionary Computing · Computer Science 2011-06-02 A. E. Eiben , N. Ferreira , M. Schut , S. Kernbach

Context: Evolutionary algorithms typically require a large number of evaluations (of solutions) to converge - which can be very slow and expensive to evaluate.Objective: To solve search-based software engineering (SE) problems, using fewer…

Software Engineering · Computer Science 2017-09-19 Jianfeng Chen , Vivek Nair , Tim Menzies

Phenotypic plasticity and its evolution may help evolutionary rescue in a novel and stressful environment, especially if environmental novelty reveals cryptic genetic variation that enables the evolution of increased plasticity. However,…

Populations and Evolution · Quantitative Biology 2016-09-23 Jaime Ashander , Luis-Miguel Chevin , Marissa L. Baskett

Genetic Algorithms (GAs) are known for their efficiency in solving combinatorial optimization problems, thanks to their ability to explore diverse solution spaces, handle various representations, exploit parallelism, preserve good…

Neural and Evolutionary Computing · Computer Science 2023-09-29 Majid Sohrabi , Amir M. Fathollahi-Fard , Vasilii A. Gromov

There is an urgent and well-recognized need to extend genetic studies to diverse populations, but several obstacles continue to be prohibitive, including (but not limited to) the difficulty of recruiting individuals from diverse populations…

Populations and Evolution · Quantitative Biology 2021-09-28 Charleston W. K. Chiang

Since genetic algorithm was proposed by John Holland (Holland J. H., 1975) in the early 1970s, the study of evolutionary algorithm has emerged as a popular research field (Civicioglu & Besdok, 2013). Researchers from various scientific and…

Neural and Evolutionary Computing · Computer Science 2015-08-04 Ka-Chun Wong

Recently, the RIDL-SIT technology has been field-tested for control of Aedes aegypti. The technique consists of releasing genetically modified mosquitoes carrying a "lethal gene". In 2016 the World Health Organisation (WHO) and the…

Populations and Evolution · Quantitative Biology 2020-06-02 Mario A. Natiello , Hernán G. Solari

Species introductions promote secondary contacts between taxa with long histories of allopatric divergence. Anthropogenic contact zones thus offer valuable contrasts to speciation studies in natural systems where past spatial isolations may…

Populations and Evolution · Quantitative Biology 2020-06-11 Frédérique Viard , Cynthia Riginos , Nicolas Bierne

Sexual reproduction presents significant challenges to formal treatment of evolutionary processes. A starting point for systematic treatments of ecological and evolutionary phenomena has been provided by the gene centered view of evolution…

Biological Physics · Physics 2009-11-06 Hiroki Sayama , Les Kaufman , Yaneer Bar-Yam

In this study we develop an alternative way to model the ocean reflecting the chaotic nature of ocean flows and uncertainty of ocean models -- instead of making use of classical deterministic or stochastic differential equations we offer a…

Fluid Dynamics · Physics 2023-02-20 Igor Shevchenko , Pavel Berloff

Experimental studies are prevalent in Evolutionary Computation (EC), and concerns about the reproducibility and replicability of such studies have increased in recent times, reflecting similar concerns in other scientific fields. In this…

Artificial Intelligence · Computer Science 2022-03-30 Manuel López-Ibáñez , Juergen Branke , Luís Paquete

he greatest weakness of evolutionary algorithms, widely used today, is the premature convergence due to the loss of population diversity over generations. To overcome this problem, several algorithms have been proposed, such as the…

Neural and Evolutionary Computing · Computer Science 2019-08-22 Asmaa Ghoumari , Amir Nakib

Genetic algorithms, computer programs that simulate natural evolution, are increasingly applied across many disciplines. They have been used to solve various optimisation problems from neural network architecture search to strategic games,…

Neural and Evolutionary Computing · Computer Science 2021-09-14 Aymeric Vie , Alissa M. Kleinnijenhuis , Doyne J. Farmer

In this article we provide a comprehensive review of the different evolutionary algorithm techniques used to address multimodal optimization problems, classifying them according to the nature of their approach. On the one hand there are…

Neural and Evolutionary Computing · Computer Science 2015-08-24 Noe Casas

Our view of the microbial world and its impact on human health is changing radically with the ability to sequence uncultured or unculturable microbes sampled directly from their habitats, ability made possible by fast and cheap next…

Quantitative Methods · Quantitative Biology 2013-05-13 Edi Prifti , Jean-Daniel Zucker

Deep Reinforcement Learning (DRL) algorithms have been successfully applied to a range of challenging control tasks. However, these methods typically suffer from three core difficulties: temporal credit assignment with sparse rewards, lack…

Machine Learning · Computer Science 2018-10-30 Shauharda Khadka , Kagan Tumer

Generative Artificial Intelligence (GenAI) is driving significant environmental impacts. The rapid development and deployment of increasingly larger algorithmic models capable of analysing vast amounts of data are contributing to rising…

Computers and Society · Computer Science 2025-02-18 Ana Valdivia

Grammatical Evolution (GE) is one of the most popular Genetic Programming (GP) variants, and it has been used with success in several problem domains. Since the original proposal, many enhancements have been proposed to GE in order to…

Neural and Evolutionary Computing · Computer Science 2021-03-16 Jessica Mégane , Nuno Lourenço , Penousal Machado

Gene-environment interactions have important implications to elucidate the genetic basis of complex diseases beyond the joint function of multiple genetic factors and their interactions (or epistasis). In the past, G$\times$E interactions…

Applications · Statistics 2020-03-09 Fei Zhou , Jie Ren , Xi Lu , Shuangge Ma , Cen Wu