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Network alignment generalizes and unifies several approaches for forming a matching or alignment between the vertices of two graphs. We study a mathematical programming framework for network alignment problem and a sparse variation of it…

Optimization and Control · Mathematics 2011-11-03 Mohsen Bayati , David F. Gleich , Amin Saberi , Ying Wang

Given a set of pattern strings $\mathcal{P}=\{P_1, P_2,\ldots P_k\}$ and a text string $S$, the classic dictionary matching problem is to report all occurrences of each pattern in $S$. We study the dictionary problem in the compressed…

Data Structures and Algorithms · Computer Science 2025-09-04 Philip Bille , Inge Li Gørtz , Simon J. Puglisi , Simon R. Tarnow

Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. Sampled string…

Data Structures and Algorithms · Computer Science 2019-08-19 Simone Faro , Arianna Pavone , Francesco Pio Marino

Program behavior may depend on parameters, which are either configured before compilation time, or provided at run-time, e.g., by sensors or other input devices. Parametric program analysis explores how different parameter settings may…

Programming Languages · Computer Science 2014-06-23 Thomas M. Gawlitza , Martin D. Schwarz , Helmut Seidl

Learning under distribution shifts is a challenging task. One principled approach is to exploit the invariance principle via the structural causal models. However, the invariance principle is violated when the response is intervened, making…

Methodology · Statistics 2023-03-14 Kang Du , Yu Xiang

We present a framework for computing with input data specified by intervals, representing uncertainty in the values of the input parameters. To compute a solution, the algorithm can query the input parameters that yield more refined…

Data Structures and Algorithms · Computer Science 2015-03-19 Manoj Gupta , Yogish Sabharwal , Sandeep Sen

We introduce a new technique for solving uni-parametric versions of linear programs, convex quadratic programs, and linear complementarity problems in which a single parameter is permitted to be present in any of the input data. We…

Optimization and Control · Mathematics 2022-03-25 Nathan Adelgren

Strings form a fundamental data type in computer systems. String searching has been extensively studied since the inception of computer science. Increasingly many applications have to deal with imprecise strings or strings with fuzzy…

Databases · Computer Science 2015-09-30 Sharma V. Thankachan , Manish Patil , Rahul Shah , Sudip Biswas

We consider the design of a pattern recognition that matches templates to images, both of which are spatially sampled and encoded as temporal sequences. The image is subject to a combination of various perturbations. These include ones that…

Computer Vision and Pattern Recognition · Computer Science 2009-05-22 Ivan Tyukin , Tatiana Tyukina , Cees van Leeuwen

Three aspects of applying homotopy continuation, which is commonly used to solve parameterized systems of polynomial equations, are investigated. First, for parameterized systems which are homogeneous, we investigate options for performing…

Numerical Analysis · Mathematics 2017-10-18 Jonathan D. Hauenstein , Margaret H. Regan

We present a new streaming algorithm for the $k$-Mismatch problem, one of the most basic problems in pattern matching. Given a pattern and a text, the task is to find all substrings of the text that are at the Hamming distance at most $k$…

Data Structures and Algorithms · Computer Science 2019-04-24 Jakub Radoszewski , Tatiana Starikovskaya

A type system combining type application, constants as types, union types (associative, commutative and idempotent) and recursive types has recently been proposed for statically typing path polymorphism, the ability to define functions that…

Logic in Computer Science · Computer Science 2020-06-30 Juan Edi , Andrés Viso , Eduardo Bonelli

Color coding is an algorithmic technique used in parameterized complexity theory to detect "small" structures inside graphs. The idea is to derandomize algorithms that first randomly color a graph and then search for an easily-detectable,…

Computational Complexity · Computer Science 2019-01-14 Max Bannach , Till Tantau

Permutation patterns and pattern avoidance are central, well-studied concepts in combinatorics and computer science. Given two permutations $\tau$ and $\pi$, the pattern matching problem (PPM) asks whether $\tau$ contains $\pi$. This…

Data Structures and Algorithms · Computer Science 2025-07-21 Benjamin Aram Berendsohn

The equidistant subsequence pattern matching problem is considered. Given a pattern string $P$ and a text string $T$, we say that $P$ is an \emph{equidistant subsequence} of $T$ if $P$ is a subsequence of the text such that consecutive…

Data Structures and Algorithms · Computer Science 2020-02-18 Mitsuru Funakoshi , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda , Ayumi Shinohara

We introduce a new string matching problem called order-preserving matching on numeric strings where a pattern matches a text if the text contains a substring whose relative orders coincide with those of the pattern. Order-preserving…

Data Structures and Algorithms · Computer Science 2013-02-19 Jinil Kim , Peter Eades , Rudolf Fleischer , Seok-Hee Hong , Costas S. Iliopoulos , Kunsoo Park , Simon J. Puglisi , Takeshi Tokuyama

The fundamental question considered in algorithms on strings is that of indexing, that is, preprocessing a given string for specific queries. By now we have a number of efficient solutions for this problem when the queries ask for an exact…

Data Structures and Algorithms · Computer Science 2023-04-04 Paweł Gawrychowski , Garance Gourdel , Tatiana Starikovskaya , Teresa Anna Steiner

Universal quantifiers occur frequently in proof obligations produced by program verifiers, for instance, to axiomatize uninterpreted functions and to express properties of arrays. SMT-based verifiers typically reason about them via…

Programming Languages · Computer Science 2021-12-15 Alexandra Bugariu , Arshavir Ter-Gabrielyan , Peter Müller

In this paper, we consider one-to-one matchings between two disjoint groups of agents. Each agent has a preference over a subset of the agents in the other group, and these preferences may contain ties. Strong stability is one of the…

Computer Science and Game Theory · Computer Science 2024-01-08 Naoyuki Kamiyama

Varying coefficient model is often used in statistical modeling since it is more flexible than the parametric model. However, model detection and variable selection of varying coefficient model are poorly understood in mode regression.…

Methodology · Statistics 2020-09-23 Xuejun Ma , Yue Du , Jingli Wang
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