Related papers: On dynamics of excitation in F-actin: automaton mo…
We simulate an actin filament as an automaton network. Every atom takes two or three states and updates its state, in discrete time, depending on a ratio of its neighbours in some selected state. All atoms/automata simultaneously update…
Actin is a globular protein which forms long filaments in the eukaryotic cytoskeleton, whose roles in cell function include structural support, contractile activity to intracellular signalling. We model actin filaments as two chains of…
Actin is a globular protein which forms long polar filaments in eukaryotic. The actin filaments play roles of cytoskeleton, motility units , information processing and learning. We model actin filament as a double chain of finite state…
We study two-dimensional cellular automata, each cell takes three states: resting, excited and refractory. A resting cell excites if number of excited neighbours lies in a certain interval (excitation interval). An excited cell become…
Filamentous actin, a species of dynamic protein polymers, is one of the main components of the cytoskeleton of eukaryotic cells. We formulate a class of models that predict the possibility of bistable steady states in populations of dynamic…
Periodicity and relaxation are investigated for the trajectories of the states in one-dimensional finite cellular automata with rule-90 and 150. The time evolutions are described with matrices. Eigenvalue analysis is applied to clarify the…
We define a cellular automaton where a resting cell excites if number of its excited neighbours belong to some specified interval and boundaries of the interval change depending on ratio of excited and refractory neighbours in the cell's…
In a recent paper [arXiv:1506.06649 [nlin.CG]], we presented an example of a 3-state cellular automaton which exhibits behaviour analogous to degenerate hyperbolicity often observed in finite-dimensional dynamical systems. We also…
We study a discrete-time interacting particle system with continuous state space which is motivated by a mathematical model for turnover through branching in actin filament networks. It gives rise to transient clusters reminiscent of actin…
An Automata Network is a map ${f:Q^n\rightarrow Q^n}$ where $Q$ is a finite alphabet. It can be viewed as a network of $n$ entities, each holding a state from $Q$, and evolving according to a deterministic synchronous update rule in such a…
Eukaryotic cells demonstrate a wide variety of dynamic patterns of filamentous actin (F-actin) and its regulators. Some of these patterns play important roles in cell functions, such as distinct motility modes, which motivate this study. We…
Commonly studied cellular automata are memoryless and have fixed topology of connections between cells. However by allowing updates of links and short-term memory in cells we may potentially discover novel complex regimes of spatio-temporal…
A simple one-dimensional cellular automaton model with threshold dynamics is introduced. The cumulative distribution of the size of the relaxations is analytically computed and behaves as a power law with an exponent equal to -1. This…
The actin droplet machine is a computer model of a three-dimensional network of actin bundles developed in a droplet of a physiological solution, which implements mappings of sets of binary strings. The actin bundle network is conductive to…
Networks of filamentous actin (F-actin) are important for the mechanics of most animal cells. These cytoskeletal networks are highly dynamic, with a variety of actin-associated proteins that control cross-linking, polymerization and force…
Actin is a filamentary protein which has many remarkable properties making it an ideal system for the study of the dynamics and mechanics of semi-flexible polymer solutions and gels; actin has a persistence length of over 10 microns and can…
The dynamic behavior of bundles of actin filaments growing against a loaded obstacle is investigated through a generalized version of the standard multi filaments Brownian Ratchet model in which the (de)polymerizing filaments are treated…
Phyllosilicate is a sheet of silicate tetrahedra bound by basal oxygens. A phyllosilicate excitable automaton is a regular network of finite state machines, which mimics structure of a silicate sheet. A node of the silicate sheet is an…
Each cell of a two-dimensional lattice is painted one of k colors, arranged in a "color wheel." The colors advance (0 to k-1 mod k) either automatically or by contact with at least a threshold number of successor colors in a prescribed…
In this paper, a cellular automaton model of vehicular traffic in Manhattan-like urban system is proposed. In this model, the origin-destination trips and traffic lights have been considered. The system exhibits three different states,…