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Deep learning has achieved significant breakthroughs in medical imaging, but these advancements are often dependent on large, well-annotated datasets. However, obtaining such datasets poses a significant challenge, as it requires…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Siteng Ma , Honghui Du , Yu An , Jing Wang , Qinqin Wang , Haochang Wu , Aonghus Lawlor , Ruihai Dong

Artificial intelligence (AI) has become increasingly central to precision medicine by enabling the integration and interpretation of multimodal data, yet implementation in clinical settings remains limited. This paper provides a scoping…

Artificial Intelligence · Computer Science 2025-10-17 Göktuğ Bender , Samer Faraj , Anand Bhardwaj

Information overload and the rapid pace of scientific advancement make it increasingly difficult to evaluate and allocate resources to new research proposals. Is there a structure to scientific discovery that could inform such decisions? We…

Digital Libraries · Computer Science 2025-08-21 Giacomo Radaelli , Jonah Lynch

The overwhelming amount of available scholarly literature in the life sciences poses significant challenges to scientists wishing to keep up with important developments related to their research, but also provides a useful resource for the…

Quantitative Methods · Quantitative Biology 2011-03-29 Huijun Wang , Ying Ding , Jie Tang , Xiao Dong , Bing He , Judy Qiu , David J. Wild

The quickly-expanding nature of published medical literature makes it challenging for clinicians and researchers to keep up with and summarize recent, relevant findings in a timely manner. While several closed-source summarization tools…

Information Retrieval · Computer Science 2023-10-26 Alejandro Lozano , Scott L Fleming , Chia-Chun Chiang , Nigam Shah

In the field of image classification, existing methods often struggle with biased or ambiguous data, a prevalent issue in real-world scenarios. Current strategies, including semi-supervised learning and class blending, offer partial…

Computer Vision and Pattern Recognition · Computer Science 2024-04-30 Lars Schmarje , Vasco Grossmann , Claudius Zelenka , Johannes Brünger , Reinhard Koch

High-quality data accumulation is now becoming ubiquitous in the health domain. There is increasing opportunity to exploit rich data from normal subjects to improve supervised estimators in specific diseases with notorious data scarcity. We…

Machine Learning · Computer Science 2021-10-13 Marc-Andre Schulz , Bertrand Thirion , Alexandre Gramfort , Gaël Varoquaux , Danilo Bzdok

In the rapidly evolving fields of Artificial Intelligence (AI) and Machine Learning (ML), the reproducibility crisis underscores the urgent need for clear validation methodologies to maintain scientific integrity and encourage advancement.…

Computers and Society · Computer Science 2025-04-01 Abhyuday Desai , Mohamed Abdelhamid , Nakul R. Padalkar

Verification of biomedical claims is critical for healthcare decision-making, public health policy and scientific research. We present an interactive biomedical claim verification system by integrating LLMs, transparent model explanations,…

Human-Computer Interaction · Computer Science 2025-03-03 Siting Liang , Daniel Sonntag

Scientific paper retrieval is essential for supporting literature discovery and research. While dense retrieval methods demonstrate effectiveness in general-purpose tasks, they often fail to capture fine-grained scientific concepts that are…

Information Retrieval · Computer Science 2025-10-07 Yunyi Zhang , Ruozhen Yang , Siqi Jiao , SeongKu Kang , Jiawei Han

Reproducibility is one of the core dimensions that concur to deliver Trustworthy Artificial Intelligence. Broadly speaking, reproducibility can be defined as the possibility to reproduce the same or a similar experiment or method, thereby…

Artificial Intelligence · Computer Science 2023-02-27 Riccardo Albertoni , Sara Colantonio , Piotr Skrzypczyński , Jerzy Stefanowski

Determining whether published scientific findings can successfully be replicated is a long-standing challenge in the empirical sciences. Existing approaches for replicability assessment typically rely either on human judgment, i.e.,…

Accurately and consistently indexing biomedical literature by publication type and study design is essential for supporting evidence synthesis and knowledge discovery. Prior work on automated publication type and study design indexing has…

Computation and Language · Computer Science 2026-05-13 Shufan Ming , Joe D. Menke , Neil R. Smalheiser , Halil Kilicoglu

Objective: Semantic indexing of biomedical literature is usually done at the level of MeSH descriptors with several related but distinct biomedical concepts often grouped together and treated as a single topic. This study proposes a new…

Computation and Language · Computer Science 2023-10-06 Anastasios Nentidis , Thomas Chatzopoulos , Anastasia Krithara , Grigorios Tsoumakas , Georgios Paliouras

Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

The Open Access movement in scientific publishing and search engines like Google Scholar have made scientific articles more broadly accessible. During the last decade, the availability of scientific papers in full text has become more and…

Digital Libraries · Computer Science 2015-05-07 Iana Atanassova , Marc Bertin , Philipp Mayr

Tables on the Web contain a vast amount of knowledge in a structured form. To tap into this valuable resource, we address the problem of table retrieval: answering an information need with a ranked list of tables. We investigate this…

Information Retrieval · Computer Science 2021-05-14 Shuo Zhang , Krisztian Balog

Documents in the health domain are often annotated with semantic concepts (i.e., terms) from controlled vocabularies. As the volume of these documents gets large, the annotation work is increasingly done by algorithms. Compared to humans,…

Information Retrieval · Computer Science 2023-04-11 Mengtian Guo , David Gotz , Yue Wang

The deep learning field is growing rapidly as witnessed by the exponential growth of papers submitted to journals, conferences, and pre-print servers. To cope with the sheer number of papers, several text mining tools from natural language…

Computation and Language · Computer Science 2022-04-04 Daehyun Cho , Christian Wallraven

Neurosymbolic artificial intelligence is a growing field of research aiming to combine neural network learning capabilities with the reasoning abilities of symbolic systems. Informed multi-label classification is a sub-field of…

Artificial Intelligence · Computer Science 2025-01-24 Arthur Ledaguenel , Céline Hudelot , Mostepha Khouadjia